PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00485-abinit-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 679aa    MW: 74384.9 Da    PI: 7.263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00485-abinit-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08270290526
                                                            --SGGGGTS--TTTTT-SS-SS CS
                                                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                            +C+ f++ G C+ Gd+C +aHg
  augustus_masked-scaffold00485-abinit-gene-0.10-mRNA-1 270 PCPEFRK-GACPKGDSCEYAHG 290
                                                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.97E-1552153IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-974143IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-1576156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.1176100IPR002110Ankyrin repeat
PROSITE profilePS5029714.71676156IPR020683Ankyrin repeat-containing domain
SMARTSM002483.9E-476106IPR002110Ankyrin repeat
CDDcd002041.53E-1378156No hitNo description
PROSITE profilePS500889.164111146IPR002110Ankyrin repeat
SMARTSM002480.023111143IPR002110Ankyrin repeat
PROSITE profilePS5010313.77265292IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5265291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5270292IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5270290IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869300324IPR000571Zinc finger, CCCH-type
SMARTSM0035637300323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MCSGSKSKLC SSNFVMEGEF LMQNNGFFYD GSLLLELSAT DDLEAFKSEV EEKGFDVGKA  60
SFWYCRRIGS KKMAFEERTP LMIAAMYGST RVVKYIIETG KIDVNRVCGS DRVNALHCAV  120
AGGANSSLEI VKLLLDASAD ANCVNANGNK PIDLIAPALK SPSNSRRKAM ELVLKGDNSV  180
GEGGQFVTEE EELQRSVMPQ GTEKKEYPID ISLPDINNGI YGTDEFRMYT FKVKPCSRAY  240
SHDWTECPFV HPGENARRRD PRKYPYTCVP CPEFRKGACP KGDSCEYAHG VFESWLHPAQ  300
YRTRLCKDET GCARKVCFFA HKPEELRPVY ASTGSAMPSP KSHSAGALDM TVMSPLSLSS  360
SSLPMPTTST PPMSPLAAAS SPKGGNLWQN KVNISPPALQ LPGSRLKTAL SARDLDFEME  420
LRGLESHVNQ QQQQQLIDEI ARLSSPSCWS KEYSRIGDLK PTNLDDVFGT HDASMLSQLQ  480
GLSLKPTTPT QLQSPNALQM RQNMNQLRAS YPTNLSSSPV RKPSSFGFDS SAAVAAAVMN  540
SRSAAFAKRS QSFIDRGAGT HRPGLTAAAN SASMMSSTRS DWSSPDGKLD WGIQGDELSK  600
LKKSASFGFR NNNVVTTLSP SAVDEPDVSW VNSLVKDVSH DSSGLFGAER QQYNHGRGGH  660
ELLPQWVEQL YIEQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7963950.0FR796395.1 Fagus sylvatica partial zinc finger gene, exon 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900055.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2N9GCH90.0A0A2N9GCH9_FAGSY; Uncharacterized protein
STRINGEMJ214130.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein