PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00457-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 177aa    MW: 19400.5 Da    PI: 5.631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00457-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-171565155
                                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                                          ++ykGVr++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l++
  augustus_masked-scaffold00457-abinit-gene-0.4-mRNA-1 15 KKYKGVRQRK-WGKWVSEIRVP---G-TqERLWLGSYSTPEAAAMARDVAFYCLHK 65
                                                          59*******9.**********8...3.35*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-241575No hitNo description
PfamPF008474.2E-91663IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-171675IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-241676IPR001471AP2/ERF domain
PROSITE profilePS5103220.6391675IPR001471AP2/ERF domain
SMARTSM003806.8E-251681IPR001471AP2/ERF domain
PRINTSPR003678.0E-91728IPR001471AP2/ERF domain
PRINTSPR003678.0E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSCSSEENGA CTSQKKYKGV RQRKWGKWVS EIRVPGTQER LWLGSYSTPE AAAMARDVAF  60
YCLHKPSTLE KLNFPSMLPS CSLRTDLSPR SVQKAASDAG MAIDAQLITD RLPESNERKV  120
FDHGHGHSGG GGGGGGHGLE AGFWENGGDN NYYGMTSWQG SEFKEEEDLS ISIEDYL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894640.11e-101ethylene-responsive transcription factor ERF020-like
SwissprotO805422e-44ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA0A2N9J3537e-91A0A2N9J353_FAGSY; Uncharacterized protein
STRINGXP_008219092.12e-60(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-46ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]