PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00248-abinit-gene-1.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 327aa    MW: 35355.4 Da    PI: 9.3251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00248-abinit-gene-1.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064129151123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++C+ C++ F ++  L  H++ H
  augustus_masked-scaffold00248-abinit-gene-1.4-mRNA-1 129 FTCNFCNRNFYSSQALGGHQNAH 151
                                                           89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.7E-4124155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.48E-7125156No hitNo description
PROSITE profilePS5015711.531129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEAQAHGNSL HRPCASEASS ISATSEGPPP PSLKKELGVD ESNKVMIMKM KEKVSKHVSD  60
HADQPAPSLG SSSSRVLLDL KLSNDDSSRG TSKVELNLIN SMNSSSSQVP NEPVSDENTQ  120
EKQPGNRVFT CNFCNRNFYS SQALGGHQNA HKQERALAKR RQGMEMGAFG HPHHFPYYPY  180
SNLSTHPLYG SLNRSLLSSA SSSSSPLGVR MESMIHKTSF PWSSSPGYRF GHAGWSRQAL  240
LNPQPNMDSL RMEGFQAHNG GFGLAGGNSS PAIKLEEINT NALRNIGGSS TINTSKIDIR  300
PTITSDYLPR EGPPKNGAPG LDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884145.10.0zinc finger protein 1-like
TrEMBLA0A2N9IKW21e-125A0A2N9IKW2_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.18e-19zinc finger protein 3