PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00102-abinit-gene-1.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ERF

Protein Properties

Length: 272aa MW: 29122.4 Da PI: 5.5206

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00102-abinit-gene-1.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.5	4.3e-15	109	156	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p++ ++r++lg+f +e+Aa+a++ a+++l+g augustus_masked-scaffold00102-abinit-gene-1.3-mRNA-1 109 YRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPIPEMAAAAYDVAALALKG 156 9*9.55.6*****843...5**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.47E-17	108	165	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.7E-25	108	164	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-26	108	170	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.691	108	164	IPR001471	AP2/ERF domain
CDD	cd00018	1.57E-15	109	164	No hit	No description
PRINTS	PR00367	2.8E-6	109	120	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-8	109	156	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-6	146	166	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MADHPNIPTN IHQLDQPHQQ PAALPPLDPS SQLPPQLQLV QVQHSFPFHT CDSPSPTCDS 60 PSSNQYQPQP QPQPQPQPLK SPKPTTTTTT MASSPSSSSS TTSGKHPMYR GIRCRSGKWV 120 SEIREPRKTT RIWLGTFPIP EMAAAAYDVA ALALKGSDAV LNFPGSVATY PIPASTSSVD 180 IRNAATAAAA LKKAELSESQ SQLQQLQNDS STMNAGWTSS SGTEFLDEEA IFDMPSLLVD 240 MAEGMLVSPP RINSSHDSPA NSDGGGSLWG YF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-13	105	164	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00558	DAP	Transfer from AT5G52020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891834.1	1e-126	ethylene-responsive transcription factor ERF027-like
Refseq	XP_023911189.1	1e-126	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	6e-52	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A2I4EM63	2e-86	A0A2I4EM63_JUGRE; ethylene-responsive transcription factor ERF027-like
STRING	EOY24623	9e-70	(Theobroma cacao)
STRING	cassava4.1_026925m	1e-69	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	1e-44	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]