PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00039-abinit-gene-1.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 157aa    MW: 17346.3 Da    PI: 10.309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00039-abinit-gene-1.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-1958109256
                                                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                            +y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa a+++a+ +++g
  augustus_masked-scaffold00039-abinit-gene-1.10-mRNA-1  58 HYRGVRRRP-WGKYAAEIRD----SaRHgARIWLGTFTTAEEAALAYDKAAFRMRG 108
                                                            8********.**********....33236**************************9 PP

                                                    AP2  56 e 56 
                                                            +
  augustus_masked-scaffold00039-abinit-gene-1.10-mRNA-1 109 A 109
                                                            5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-2957117No hitNo description
Gene3DG3DSA:3.30.730.103.6E-3157117IPR001471AP2/ERF domain
PROSITE profilePS5103223.52558116IPR001471AP2/ERF domain
PfamPF008471.1E-1358108IPR001471AP2/ERF domain
SMARTSM003801.1E-3458122IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-2358118IPR016177DNA-binding domain
PRINTSPR003673.9E-115970IPR001471AP2/ERF domain
PRINTSPR003673.9E-118298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVLASQNELP FNENDSQDMT LYQVINEAMA LNTSFVPQRH QINTSSSLEP ARNIGKKHYR  60
GVRRRPWGKY AAEIRDSARH GARIWLGTFT TAEEAALAYD KAAFRMRGAK ALLNFPAEVV  120
AASSVQRFNP NSSMVSSTKH DSESSGSSST HSIGNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-3357119466ATERF1
3gcc_A9e-3357119466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2169171e-46AC216917.1 Populus trichocarpa clone POP066-L06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908481.11e-100pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046814e-62PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A2N9GEN22e-91A0A2N9GEN2_FAGSY; Uncharacterized protein
STRINGcassava4.1_017103m4e-71(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-31ethylene response factor 1