PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc11335.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 109aa MW: 11381 Da PI: 11.5522 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.5 | 2.4e-08 | 28 | 83 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 +rr+ +e+Er RR+ + ++eL l+P + ++ + ++e+Av Y+ L Zpz_sc11335.1.g00010.1.am.mk 28 KRRKTPEIERARRRTMSGLYAELAALIPGvPArVSNDVQTTRTRVVEEAVAYVGAL 83 79999************************766777777799999999999998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.09E-8 | 25 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.64E-6 | 25 | 80 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-8 | 27 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.592 | 27 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-6 | 28 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-4 | 33 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MVGGEAPVTP SLAAEGKRSP ATAAPSSKRR KTPEIERARR RTMSGLYAEL AALIPGVPAR 60 VSNDVQTTRT RVVEEAVAYV GALRAAAAEL EAQRVVAAGR SRVAARTDG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 40 | RRKTPEIERARRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc11335.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682965.1 | 3e-14 | uncharacterized protein LOC111257451 | ||||
TrEMBL | A0A1E5V8M3 | 4e-14 | A0A1E5V8M3_9POAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |