PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04961.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 497aa    MW: 53711.5 Da    PI: 9.7742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04961.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.82.3e-15422447126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ + +tG C+yGd+C+FaHg
  Zpz_sc04961.1.g00030.1.am.mk 422 FKTELCNKWEETGACPYGDQCQFAHG 447
                                   79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-18416454IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-10418453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601421449IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10421448IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-12422447IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-10455485IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7456485IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4459486IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338459487IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MACPLTSAAW HGAPARRRFV SDPYVTNHVR LARTQAKKLS GAGVQAQPAS QQLPTTDWST  60
ARCTKDDDEP PPRSGSPVVR PAHSPAVLAL ADTRAPRVSP AMDMLPGRPG YINHDAARSP  120
ARTHRTGPSS PTQISGSSSA PRTSALRSGR CGLLSSSSDA AMQEALISPA NADRLRSALE  180
LKSFAFGDQR LSSPRHFGDD ALFRCSSPFS PSFGFSSPSP HATSVSLSPS SSASLVDDGD  240
DAAAGDVTGH RLQLARLALQ YQEAADRYEL CVARLAEAAD EAAALRRENA QLRVANCDLA  300
SRLALLSGKQ TAPAAIAEEI RRLRHVEQNQ NAVPAAAERA PEKLTVLPKS ISVRSKDYLK  360
MNKAPVTPVA NNRRPRASNP TVNNHSSQRL YVDANSGMKG EKSKEQRSAG GMELEVYNQG  420
MFKTELCNKW EETGACPYGD QCQFAHGVAE LRPVIRHPRY KTQVCRMVLA GEPCPYGHRC  480
HFRHTLTPAE RLLLPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-21422484466Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04961.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421471e-102BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154780.11e-144zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY51e-117C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A287L6N61e-143A0A287L6N6_HORVV; Uncharacterized protein
TrEMBLA0A3B6EIL51e-144A0A3B6EIL5_WHEAT; Uncharacterized protein
TrEMBLA0A446NIW51e-144A0A446NIW5_TRITD; Uncharacterized protein
STRINGMLOC_5666.31e-144(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-53C3H family protein