PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04290.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 833aa    MW: 88941 Da    PI: 11.4495
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04290.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer841.7e-26368414556
                   ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                                   +YkeC++NhAa++Gg+a+DGCgEfmp+     ++++lkC ACgCHR+FHRr 
  Zpz_sc04290.1.g00030.1.am.mk 368 KYKECMRNHAAAMGGQAFDGCGEFMPD-----SSDSLKCVACGCHRSFHRRA 414
                                   7*************************8.....678***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-18368413IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-23368414IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.3E-22368414IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.714369414IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.38E-17485550IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-27487552IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-25491548IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MVAACADCSG SWQGGQGGAV PLPSPSIGVL ARLDLALVSV PGLKPLLAPQ SIVQDHSTRK  60
LNGVSRCPCA PLHCPGAALY RSRHAPSRRM PSGACVGLSR TNVHLLPFTS HPPDPHLHGD  120
QVQCRARAVE RCATPSRDIC TGVTGGSVSI RLPSPSPSPS PSSIRAEGRR STVRRVRADA  180
DEGPSPAKGH GLLAAPFSNT GSSTHRRDFL STSPPSYRIG AVRPGGPCAP PSPHVVGPRR  240
GECQEYRLQG KLDTLPAVNP RARGVSGAGL LAHVARGEHR ITPLNGHVAC SHPPRRCGRR  300
KRLARVKRAQ CRRDRTQAAR PRARERDSVR LADGVRRENS SGWWCWDMME HLSLVPYEGS  360
GGGGGGGKYK ECMRNHAAAM GGQAFDGCGE FMPDSSDSLK CVACGCHRSF HRRAAGTLPV  420
FFRPPPPPHH VAALQAFLAT APVPPPPHLA LPYHALPAAP WNVRGGSETP PRPEDFGVVG  480
GAMVSGGDAG RKRFRTKFTP EQKARMREFA EKQGWRVNRN DDGALERFCK EIGVRRQVLK  540
VWMHNHKNHH GQKADQNHHH LAASVPSAGA PGATASAIIN PAAGTGTGTG IIPGVGDDDD  600
DDTDDSPLRA AVSSPSPSPI SARVSALWDD RWVEARLRLH KLGAARCAGG DAFFRSRLGA  660
ADHVSASLSV RAAVVEEHQT PAPPHHYRPW LFRRVHLRGA VVRGFTFAAP LFSLSSRSDT  720
YRPLVLSVLS RSFAAVTVVA GGRTTGPRPR DAPARALISI APSRRLRSVL VLLQMPRAVG  780
QASSRKSQRQ VGTDSSSVTP CAAHGHSRWI DGAVRPSRRR GLPVHATNHP SAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-224925481874ZF-HD homeobox family protein
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04290.1.g00030.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270254e-54KJ727025.1 Zea mays clone pUT4006 ZF-HD transcription factor (ZHD15) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-40homeobox protein 31