PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03673.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 850aa MW: 89478.4 Da PI: 10.221

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03673.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	1e-37	556	617	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC stntkfCyynnys +qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Zpz_sc03673.1.g00020.1.am.mk 556 KEKALNCPRCSSTNTKFCYYNNYSRHQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 617 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-29	552	614	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-32	558	614	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.621	560	614	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	562	598	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MRPDARRTSI PSLAWFNVIL VSRHSNVPSH SEDALALETH TRDATRSEAV SSRTKVTVGD 60 AAGLGVEIWS LLSSASYRSL GGVGLLMTVL TQLSTSSRHP ARPKQRRPPN PTFLPLSSSQ 120 RRNVQRGSFR CHRSFCRTFA FEPMTFPATG VQRSLTGCSF STTGLSLTNE QNGPPLLKPD 180 GRTTTKQPPP FHSRGSLVPC LIRFQKPGNI PLLVIAFASD ASSQAVEDKA KSDRRSSGRG 240 DRKASRLGEF SVRITAGSDV DRDYSGMPDS GQLPEKSMVH GDIPLPVADA VYIIAQEMRS 300 CYALADGRTP WNCAGSDKEM EGPLSLGTFL AFRSRVTFEI FLTPLHPVLF WVAFPIDGGL 360 ATAGYERGHA MIRSPVGGAI MAAYSSVRRA ERRSDWRAQG DGRWVPGGRN ARCLWRGSAA 420 CARAECDRFG RGAGERGAAR VVASLAPPVT AHRLVPGART LNRRRGYARL PSTPVLVQSE 480 GSGEEQGGEG LGLVKPMEDM LMAANAPAGN PSQGSNPNPS ATAPAPSLTP GGALRGGAPA 540 AVPGAGSAER RVRPQKEKAL NCPRCSSTNT KFCYYNNYSR HQPRYFCKTC RRYWTEGGSL 600 RNVPVGGGSR KNKRSSSSSA STSASASVTS SSMASSMGVA SKNPKLTHEG AQDLNLAFPS 660 GLPAPGDFAA FPSLESGNMC NPGGAMTSNG RGVGTGSAVG ALSAMELLRS TGGYMPLQVP 720 MQMPRDYAAA GFSFGEFRAP PPPSQSVLGF SLDAHGSAAG TAAAGYGSGA RLQGAPENAS 780 RLLFPFEDLK TPVTSGDGDG DAGASGDTGD GNNGRHQFEH GKEQTAGGPS AGHDTPGFWN 840 GMIGGSGTSW

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MRPDARRTSI PSLAWFNVIL VSRHSNVPSH SEDALALETH TRDATRSEAV SSRTKVTVGD  60
AAGLGVEIWS LLSSASYRSL GGVGLLMTVL TQLSTSSRHP ARPKQRRPPN PTFLPLSSSQ  120
RRNVQRGSFR CHRSFCRTFA FEPMTFPATG VQRSLTGCSF STTGLSLTNE QNGPPLLKPD  180
GRTTTKQPPP FHSRGSLVPC LIRFQKPGNI PLLVIAFASD ASSQAVEDKA KSDRRSSGRG  240
DRKASRLGEF SVRITAGSDV DRDYSGMPDS GQLPEKSMVH GDIPLPVADA VYIIAQEMRS  300
CYALADGRTP WNCAGSDKEM EGPLSLGTFL AFRSRVTFEI FLTPLHPVLF WVAFPIDGGL  360
ATAGYERGHA MIRSPVGGAI MAAYSSVRRA ERRSDWRAQG DGRWVPGGRN ARCLWRGSAA  420
CARAECDRFG RGAGERGAAR VVASLAPPVT AHRLVPGART LNRRRGYARL PSTPVLVQSE  480
GSGEEQGGEG LGLVKPMEDM LMAANAPAGN PSQGSNPNPS ATAPAPSLTP GGALRGGAPA  540
AVPGAGSAER RVRPQKEKAL NCPRCSSTNT KFCYYNNYSR HQPRYFCKTC RRYWTEGGSL  600
RNVPVGGGSR KNKRSSSSSA STSASASVTS SSMASSMGVA SKNPKLTHEG AQDLNLAFPS  660
GLPAPGDFAA FPSLESGNMC NPGGAMTSNG RGVGTGSAVG ALSAMELLRS TGGYMPLQVP  720
MQMPRDYAAA GFSFGEFRAP PPPSQSVLGF SLDAHGSAAG TAAAGYGSGA RLQGAPENAS  780
RLLFPFEDLK TPVTSGDGDG DAGASGDTGD GNNGRHQFEH GKEQTAGGPS AGHDTPGFWN  840
GMIGGSGTSW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03673.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-42	Dof family protein