PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03157.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 18084.2 Da PI: 8.0755 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ F ++ L H++ H Zpz_sc03157.1.g00020.1.am.mk 43 FACNYCHRKFYSSQALGGHQNGH 65 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.07E-6 | 40 | 70 | No hit | No description |
PROSITE profile | PS50157 | 10.575 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MERNEPSSQA PGVNLDLRLD VSPRRRSAPT TAPLAVDTRG EAFACNYCHR KFYSSQALGG 60 HQNGHKLERT LAKRSRDIAA AGAPPPPVPR RSATTLVHAA ATEYGAGGEF WTTTLPFRAA 120 GGAPEEYVAV TMTPPPRIDE VGGWAAAGDG GCGRLDYARN GEEIDLSLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03157.1.g00020.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086880 | 3e-48 | BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds. | |||
GenBank | BT086917 | 3e-48 | BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds. | |||
GenBank | BT087160 | 3e-48 | BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds. | |||
GenBank | EU960522 | 3e-48 | EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804127.1 | 1e-40 | zinc finger protein 10-like | ||||
TrEMBL | A0A0A9GP56 | 1e-44 | A0A0A9GP56_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ba01492.1.p | 3e-33 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 7e-18 | zinc finger protein 2 |