PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03152.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 1025aa MW: 108339 Da PI: 9.1768

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03152.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	888	933	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Zpz_sc03152.1.g00010.1.am.mk 888 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 933 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-16	881	943	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.87E-11	881	937	No hit	No description
PROSITE profile	PS50888	17.282	883	932	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-15	885	942	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-9	888	933	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	889	938	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence Send to blast
MGVEWLLPLP PTPSPPSPPP ISTSGVAGAR GVPENSNSQS CVRGRAGGGG AEAGALPLPP 60 PPRMAAASSS SAAAAATIRA HLARTGSGAD CQASPRSLLS RILLRGGDGG SSGGVFGCRV 120 RLPRRYGSGG SKDGGASEQG DTPRVKVVER APPDMPIETP RSSLGAGRRK PEEELVSMNL 180 GLGASLVLLL SKSAVELNKM VELRAQMEAL VAEIRHAAQR KMEEKQAAPA MARASYSHQE 240 SNGSSATTTV VKDPIVFPAA DADAASNCSR TTDTALSARG GGGGGVVVDP MEAELQAELN 300 RMQRRTVHGP NAPVQGLELR LPKVKTKGNA VRDSPSRSCV DDGDEPEDDA GEDDAESDEE 360 RCEDKSPPHG GVSARALERR LHELLQKRQQ ERIVELEAAL DAAQRRVHEK EREAARWRDA 420 AKLVSHRRDE SRRTVVRWRE RARAQVAGSG AKKTGSQWHV PFVHPSAACQ FHWGRHAAQV 480 TRFKCCPLLG LRARLCTLAL VQTQEVSARA PVWRQQKRQG IQWRWCHENT TRQAPGPFHP 540 AVPPAGPLHE YGTHGKPIKR YYAVDSAPFL CASRGPPPSR SHYYLQLCKR NVSQLMRTAD 600 FFAPASQPAS PPLVHSSFLS VMGDREFGTG SSCAFLSPLF FDYVGRSVAD RRAELSRRIP 660 PRHQAVSSPA QQTQSSIAMQ PSGHELAGGD GGGGAQADDF FDQMLSTLPS AWADLGGKSP 720 WELSAGAEEG HSAQAPFGDE SGLLASRLQQ HQIGGDKSSS PVMLQLSDLH RNNGLPGGAG 780 EDGGFSPLAL FTDRSAPARE EMEGGFKSPN ASGGDHAVFN GFGMHGAAAA VQQQFGQQGG 840 SVSPQSLGGP AASSGGAPTG ATSSAGGGAA PPRQQRVRAR RGQATDPHSI AERLRRERIA 900 ERMKSLQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAGM APLVASMSSE 960 GNSNGSSISN KGNSPATNGG TGTGENGGGL RVTEHRVAKM MEEDMGTAMQ YLQGKGLCLM 1020 PISLA

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence Send to blast

MGVEWLLPLP PTPSPPSPPP ISTSGVAGAR GVPENSNSQS CVRGRAGGGG AEAGALPLPP  60
PPRMAAASSS SAAAAATIRA HLARTGSGAD CQASPRSLLS RILLRGGDGG SSGGVFGCRV  120
RLPRRYGSGG SKDGGASEQG DTPRVKVVER APPDMPIETP RSSLGAGRRK PEEELVSMNL  180
GLGASLVLLL SKSAVELNKM VELRAQMEAL VAEIRHAAQR KMEEKQAAPA MARASYSHQE  240
SNGSSATTTV VKDPIVFPAA DADAASNCSR TTDTALSARG GGGGGVVVDP MEAELQAELN  300
RMQRRTVHGP NAPVQGLELR LPKVKTKGNA VRDSPSRSCV DDGDEPEDDA GEDDAESDEE  360
RCEDKSPPHG GVSARALERR LHELLQKRQQ ERIVELEAAL DAAQRRVHEK EREAARWRDA  420
AKLVSHRRDE SRRTVVRWRE RARAQVAGSG AKKTGSQWHV PFVHPSAACQ FHWGRHAAQV  480
TRFKCCPLLG LRARLCTLAL VQTQEVSARA PVWRQQKRQG IQWRWCHENT TRQAPGPFHP  540
AVPPAGPLHE YGTHGKPIKR YYAVDSAPFL CASRGPPPSR SHYYLQLCKR NVSQLMRTAD  600
FFAPASQPAS PPLVHSSFLS VMGDREFGTG SSCAFLSPLF FDYVGRSVAD RRAELSRRIP  660
PRHQAVSSPA QQTQSSIAMQ PSGHELAGGD GGGGAQADDF FDQMLSTLPS AWADLGGKSP  720
WELSAGAEEG HSAQAPFGDE SGLLASRLQQ HQIGGDKSSS PVMLQLSDLH RNNGLPGGAG  780
EDGGFSPLAL FTDRSAPARE EMEGGFKSPN ASGGDHAVFN GFGMHGAAAA VQQQFGQQGG  840
SVSPQSLGGP AASSGGAPTG ATSSAGGGAA PPRQQRVRAR RGQATDPHSI AERLRRERIA  900
ERMKSLQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAGM APLVASMSSE  960
GNSNGSSISN KGNSPATNGG TGTGENGGGL RVTEHRVAKM MEEDMGTAMQ YLQGKGLCLM  1020
PISLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	892	897	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03152.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971433	9e-80	EU971433.1 Zea mays clone 364652 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	1e-40	LJRHL1-like 2