PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03148.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 298aa MW: 31543.2 Da PI: 8.8558

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03148.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	93.2	2.8e-29	21	131	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 F+ k+y++++d++++ ++ w +++nsfvv d+ f++++Lp +Fkhsnf+SFvRQLn+Y + + ++ Zpz_sc03148.1.g00040.1.am.mk 21 FVAKTYRMVDDPATDGVVAWGADNNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYVRALRLSARVV-RApeaprrtt 100 9********************************************************64433333322.2245566655 PP ..XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 ..kekiweFkhksFkkgkkellekikrkkse 103 +++ weF+h sF +g+++ll++i r++s+ Zpz_sc03148.1.g00040.1.am.mk 101 kvDPDRWEFAHVSFLRGQTHLLRHIVRRSSS 131 4449**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.0E-34	17	128	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.6E-42	17	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.54E-29	17	128	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.3E-12	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.4E-25	21	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-12	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-12	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MTSGVVVADA AAAAPVGVAP FVAKTYRMVD DPATDGVVAW GADNNSFVVA DPFAFSQTLL 60 PAHFKHSNFS SFVRQLNTYV RALRLSARVV RAPEAPRRTT KVDPDRWEFA HVSFLRGQTH 120 LLRHIVRRSS SNNGGGGGKR KDDGGTGEKE GAAAVAMEVA RLKREQRAIE DQVAAMWRRV 180 QETERRPKQM LAFLVKVAGD PQVLRRLLDS SSGGLDGGGA GHGLSASGSS DGAGAEIVKR 240 PRLLLDGDLA GRHAATGIYG AGDDDVDGFF AADDVGFGVG DSGFSPQYAF PVDSTSGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-21	12	130	20	131	Heat shock factor protein 1
5d5v_B	8e-21	12	130	20	131	Heat shock factor protein 1
5d5v_D	8e-21	12	130	20	131	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03148.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU976669	4e-67	EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799113.1	1e-103	heat stress transcription factor C-2a-like
Swissprot	Q6EUG4	1e-94	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A2T8KUN3	1e-102	A0A2T8KUN3_9POAL; Uncharacterized protein
STRING	GRMZM2G105348_P01	1e-102	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	2e-47	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]