PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03135.1.g00120.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 313aa MW: 35112.7 Da PI: 6.187

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03135.1.g00120.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	170.2	1.7e-52	2	272	168	374
GRAS 168 fAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.............................. 214 Ae+l++ f f+ rle+l++++L ++++g a +++lq+hrll Zpz_sc03135.1.g00120.1.am.mk 2 EAESLNMAFTFHG-FLGRLETLDFDKLhdvlDIRSGYARCFSCALQMHRLLavddaaavnvgtstqaswpsgasrfvrfag 81 59*********.689999999999866668999****************************************** PP GRAS 215 ............................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 + + ++ +++ ++v+ +sPkv+vvveqea+hn+++F+ rf ea+ yy+al Zpz_sc03135.1.g00120.1.am.mk 82 gqemnksnvhpdpspttplclvaptptpSPPSRVPPLLTRFQHAVRAVSPKVLVVVEQEANHNEPEFAVRFQEAFGYYAAL 162 ********************9987555555557889************************************* PP GRAS 268 fdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 fd+l + p+ + eer+ vE++llg+ei++v+ eg errerhe l++W +r+ +aGF+pvpls++a ++a+ +lrk + Zpz_sc03135.1.g00120.1.am.mk 163 FDALqDRAGPEGQmhEERAQVEQVLLGEEIKDVLVREGMERRERHEPLHRWAARMAHAGFGPVPLSYEAKNEADEVLRKLA 243 65555655588************************************************************** PP GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++y+ e+ ++l+l+ ++rpL++vSaWr Zpz_sc03135.1.g00120.1.am.mk 244 LREYENREHGNCLLLCRSERPLYAVSAWR 272 999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	24.683	1	252	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.8E-50	2	272	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEAESLNMAF TFHGFLGRLE TLDFDKLHDV LDIRSGYARC FSCALQMHRL LAVDDAAAVN 60 VGTSTQASWP SGASRFVRFA GGQEMNKSNV HPDPSPTTPL CLVAPTPTPS PPSRVPPLLT 120 RFQHAVRAVS PKVLVVVEQE ANHNEPEFAV RFQEAFGYYA ALFDALQDRA GPEGQMHEER 180 AQVEQVLLGE EIKDVLVREG MERRERHEPL HRWAARMAHA GFGPVPLSYE AKNEADEVLR 240 KLALREYENR EHGNCLLLCR SERPLYAVSA WRPWAFEVLD SINMAVPPPA GQGPSTWTWP 300 QQQHQAPFHN FTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-14	118	272	221	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03135.1.g00120.1.am.mk

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001183060.1	5e-77	uncharacterized protein LOC100501406
TrEMBL	C4J338	1e-75	C4J338_MAIZE; Uncharacterized protein
TrEMBL	I1R3W0	1e-74	I1R3W0_ORYGL; Uncharacterized protein
STRING	ORGLA12G0021600.1	2e-75	(Oryza glaberrima)
STRING	GRMZM2G140085_P01	2e-76	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	2e-40	scarecrow-like 3