PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03120.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 397aa    MW: 41581 Da    PI: 6.2524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03120.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-10231278455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Zpz_sc03120.1.g00040.1.am.mk 231 SHSLAERVRREKISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 278
                                   8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.02E-11225282No hitNo description
SuperFamilySSF474596.94E-17225295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16227295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7231278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-10233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MADEHFFPVG DFPSGLGAAP FFGSGPYAPP VPPPGLESLD AAACAAAMAP FGMLPWASEH  60
PIPTDSAATA TEHFDSALSS LVTSPAHAGC FGDDDDDHAA QLPAARRVVA GRPGVPAGRA  120
LPLPRARRAA SXXXXGGGAA PASENVADAE TNPAVPAKGD GAGRKRKAAT AGKGKARTAA  180
ANGSGSPKRP KVTGDGDTDD VASGDAEQDT KPEPAKDYIH VRARRGQATD SHSLAERVRR  240
EKISERMKLL QSLVPGCNKI TGKALMLDEI INYVQSLQRQ VEFLSMKLST MNPELDIDAQ  300
FLPASDNDAV TMHHHQTVPL GYPDQQDPFA GAAAVHPAML DPCTTGSAFY HGAGAGFGGW  360
DAAQDELIQS AVHNQHHRHH QDQDQQHPDR GHGFHGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03120.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745739e-78EU974573.1 Zea mays clone 453265 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751112.11e-80transcription factor bHLH78 isoform X1
TrEMBLA0A0A8YTR01e-96A0A0A8YTR0_ARUDO; Uncharacterized protein
TrEMBLA0A0A9ELY01e-96A0A0A9ELY0_ARUDO; Uncharacterized protein
TrEMBLA0A0A9GES51e-96A0A0A9GES5_ARUDO; Uncharacterized protein
STRINGTraes_2AL_8E714CD46.13e-74(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-50bHLH family protein