PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03117.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 663aa MW: 70775.9 Da PI: 6.3902 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 410 | 2.2e-125 | 298 | 658 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaal 81 +lLl+ Ae v++++l a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lp+++ + s++++a+ Zpz_sc03117.1.g00010.1.sm.mk 298 LTLLLQSAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPATSPAAALlNSRVATAF 378 579************************************************************8777776656899999** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162 ++f+ +sP++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp++++Tg+gs s e le+tg Zpz_sc03117.1.g00010.1.sm.mk 379 QVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPRVKLTGLGS----SMEVLEATG 455 ********************************************************************....********* PP GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 +rL++fA++lg+pfef + va++ ++++e+L v ++Ea+aV++ + h+l+d ++s ++ +L+l+++l Pkvv++ve Zpz_sc03117.1.g00010.1.sm.mk 456 KRLSDFADTLGLPFEFCA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVE 529 ******************.7*************************9..999999999999....***************** PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 q+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a g +r + + +++Wre+l ++GF Zpz_sc03117.1.g00010.1.sm.mk 530 QDLSH-SGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGF 608 *****.899****************************************************988887.************* PP GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++l +aa+qa+lll +++sdgy++ ee+g+l lgWkd L+++SaWr Zpz_sc03117.1.g00010.1.sm.mk 609 RAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 658 *************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.753 | 271 | 638 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.5E-123 | 298 | 658 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0051457 | Biological Process | maintenance of protein location in nucleus | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MGSSSLLLFP SSASAASRAY SSAHATTTST LSSSSHSLLP PLPSPTSYSQ QDPHHLLLLH 60 RLDGHQQEQV AMVRKRPAPD MDLPPPRRHV TGDLSDVTAA AAASQQQHPP SASAQLPALP 120 TQLHLPAFQQ HGGEVDVAPP QVQPGEVTTA WVDGIIRDII GSSGPAVSVA QLIQNVREII 180 HPCNPGLASV LELRLRSLLA AADPALPPPH QHPGLVHHHT AAPGVAALPP PQSLPDKRRH 240 EAPPPPCQEE QPQSPKAPSA EETAAAAAAA SAAAAAAAKE RKEEQRRKQR DEEGLHLLTL 300 LLQSAESVNA DNLDDAHQTL LEIAELATPF GTSTQRVAAY FAEAMSARLV SSCLGLYAPL 360 PATSPAAALL NSRVATAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IIDLDIMQGL 420 QWPGLFHILA SRPGGPPRVK LTGLGSSMEV LEATGKRLSD FADTLGLPFE FCAVAEKAGN 480 VDPEKLGVTR REAVAVHWLH HSLYDVTGSD SNTLWLIQRL APKVVTMVEQ DLSHSGSFLA 540 RFVEAIHYYS ALFDSLDASY GEDSPERHVV EQQLLSREIR NVLAVGGPAR SGDVKFGSWR 600 EKLAQSGFRA ASLAGSAAAQ ASLLLGMFPS DGYTLVEENG ALKLGWKDLC LLTASAWRPI 660 QAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 0.0 | 281 | 659 | 3 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}. | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03117.1.g00010.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063682 | 0.0 | BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807416.1 | 0.0 | protein SCARECROW-like | ||||
Swissprot | A2ZHL0 | 0.0 | SCR2_ORYSI; Protein SCARECROW 2 | ||||
Swissprot | Q2QYF3 | 0.0 | SCR2_ORYSJ; Protein SCARECROW 2 | ||||
TrEMBL | A0A3L6PCB6 | 0.0 | A0A3L6PCB6_PANMI; Scarecrow | ||||
STRING | ORUFI12G01460.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS12T0122000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |