PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02839.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 404aa    MW: 43668.9 Da    PI: 5.9737
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02839.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05233252120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++Cp C k+F+r  n++ H+
  Zpz_sc02839.1.g00050.1.am.mk 233 FSCPVCLKTFNRYNNMQMHM 252
                                   89*****************9 PP
2zf-C2H212.60.00042319339323
                                   ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                   C +Cgk F  k + ++H +++
  Zpz_sc02839.1.g00050.1.am.mk 319 CRKCGKAFAVKGDWRTHEKNC 339
                                   *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66233260IPR007087Zinc finger, C2H2
SMARTSM003550.31233255IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-6233252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SuperFamilySSF576673.38E-6301337No hitNo description
Gene3DG3DSA:3.30.160.603.3E-5304337IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035582317337IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621317337IPR007087Zinc finger, C2H2
SMARTSM00355220343366IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEDPYTSFFN NPYYYYASSF PAPPAAHHLP PSLPTTYTAL YPTVAAAAPP HYSAFFQPPP  60
TTLPPLDDSS PPSPPLREAL PLLSLSPTLS RPNVEADSDS DDDADDFVQR GSSGPHAARA  120
PLFADLNCVP ACCDGDPMDV EATDDAAVAL HIGLPAAPGN GGAETDLLSG LSGRAGGACM  180
EPEEDEECKV DTGAGDSDEL VPLGFASTPI GRLNKGQYWI PTPAQILIGP TQFSCPVCLK  240
TFNRYNNMQM HMWGHGSQYR KGPESLRGVQ PTAMLRLPCY CCAPGCRNNI DHPRARPLKD  300
FRTLQTHYKR KHGLKPFLCR KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH  360
ARAFGHGHGA FGCNVDGGDG LEDDDEGAVS EIEQDCAGSC RSAR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02839.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821697.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1E5V5R30.0A0A1E5V5R3_9POAL; Zinc finger protein WIP2
TrEMBLA0A2T7D9610.0A0A2T7D961_9POAL; Uncharacterized protein
STRINGPavir.Fa00506.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]