PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02650.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 598aa    MW: 63932.2 Da    PI: 9.9643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02650.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09415462455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++i +++  L++++P +    sk   Ka +L + ++Y++sLq
  Zpz_sc02650.1.g00010.1.am.mk 415 SHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 462
                                   8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.97E-11409466No hitNo description
SuperFamilySSF474592.22E-16409478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16411479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523411461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6415462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10417467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MDLKQTAVIL SYAATHCLST AIGWAVTDIE MARGFIGSSD RHYVHATIWS LLPRAPNATT  60
IMWLSEAPIA DRFSVAFGWV SRAQSFEWTV QEADASWVVS AIKIRGVERP SKARPLTPHL  120
DAHFPPPPSS RRQARTHALA RAHTYPARSS RTRPGHQPPA SRPRLWQRSA MAHDGFPGAF  180
NELPWPLTQA AAASLQAQLP YPLSGAEWEH DAAMSSLVPS PASTVGGAGV HEAVLMEHLA  240
SRLGVSMPSP PLPSPSSRYG SCYSTPVGSP SKPVNAAANV GFAERAARLP CFTASNGKLS  300
RVASSQSLLA EQTSSPRGVA PAHGSSSDGP NRKRKAAAGG KSKAKDTMTT ATAKSPEAER  360
RAKKSKLSAD VGDDDQPRPA AGEAGHGNDK GKELVAEPPK DYIHVRARRG QATDSHSLAE  420
RVRREKISER MKLLQDIVPG CSKVTGKAVM LDEIINYVQS LQRQVEFLSM KLSTVNPRLE  480
VDVDSFVQKD ANQSCVPAPT SLPQPPPPPV YSTEGSNTAF CYTSSPAPAV PNCEPVGGRP  540
AEPSSDGVPG QHMIIGLVIE GQTVQFHQSR QRMINRGGMS GAGPHNNRVG LQSLDSLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02650.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798622.11e-130transcription factor BHLH089-like
TrEMBLA0A3L6Q2U41e-144A0A3L6Q2U4_PANMI; Transcription factor bHLH62-like
STRINGPavir.Ha00788.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-58bHLH family protein