PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02642.1.g00020.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 27443.2 Da PI: 8.2983 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.6e-13 | 87 | 132 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd++N +f Lr +P+ +++Ka+ L Av YI +L Zpz_sc02642.1.g00020.1.sm.mk 87 SHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAVSYIAEL 132 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.288 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-11 | 87 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.47E-12 | 87 | 137 | No hit | No description |
SuperFamily | SSF47459 | 9.16E-17 | 87 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-17 | 87 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-12 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDELFCATSS ASPSSPASWL HFVSSCEVPE QWLGGGGEDE LFLPGSPVVA PRSSASNNHQ 60 SAERPVQTAP KKRGRKPGSR TGCPVISHVE AERQRRDKLN RRFCDLRAAV PTVSRMDKAS 120 LLADAVSYIA ELRGRVEKLE AEAKQQLAEN AAAAAFPSFG SQEEKLEVRM VGRDAAALRL 180 TSAARHAPAR LLDALRWMDL PVQHASVCRA GGVTVLDAVV DVPAGLLQDE ACLREALLQK 240 LRGGGCRSFF FQIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-20 | 86 | 149 | 7 | 73 | Transcription factor MYC2 |
5gnj_B | 7e-20 | 86 | 149 | 7 | 73 | Transcription factor MYC2 |
5gnj_E | 7e-20 | 86 | 149 | 7 | 73 | Transcription factor MYC2 |
5gnj_F | 7e-20 | 86 | 149 | 7 | 73 | Transcription factor MYC2 |
5gnj_G | 7e-20 | 86 | 149 | 7 | 73 | Transcription factor MYC2 |
5gnj_I | 7e-20 | 86 | 149 | 7 | 73 | Transcription factor MYC2 |
5gnj_M | 7e-20 | 86 | 149 | 7 | 73 | Transcription factor MYC2 |
5gnj_N | 7e-20 | 86 | 149 | 7 | 73 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02642.1.g00020.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444643.1 | 1e-77 | transcription factor bHLH14 | ||||
Refseq | XP_004974088.1 | 1e-77 | transcription factor bHLH14 | ||||
TrEMBL | A0A1B6PIG0 | 3e-76 | A0A1B6PIG0_SORBI; Uncharacterized protein | ||||
STRING | Sb07g025310.1 | 4e-77 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 2e-28 | bHLH family protein |