PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02597.1.g00100.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 607aa MW: 64323.9 Da PI: 9.1352

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02597.1.g00100.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	32	3e-10	470	490	36	56
ZF-HD_dimer 36 gtaaalkCaACgCHRnFHRre 56 +++al+Ca CgCHRnFHR e Zpz_sc02597.1.g00100.1.am.mk 470 LHIDALRCATCGCHRNFHRIE 490 4699***************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.7E-7	471	490	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-4	472	493	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MHVAVVADVG RQDGRTELLA RSVPRAASLS SGAYMHAAPA PTDRSRGGPT SLHAAYMHGS 60 RRVSVARTSR ALSLLGGRLV TGREGAGART DWQGAVEPDT VARMSTSDRP AVPQKRAVRS 120 SELRPRVETD KPRGKGLCML SSSLVTHACA LLLPPPPNLR IDDQSGLVAS NKPTMHGSWR 180 ARKVGAVRCV PFVGRTITLT PPPPRAAAAT APPSHLVAAT AVPSPLLQCC AGLHRYPVVP 240 VSDATTFTSS LQLPCHREKE RGSRRLDVTV VASETGITGG GDEMRGRHAV VPWRRRHVVV 300 AASKLWFNPL DPKDRMELNQ LLYNPISGDP TESFSGPDGC MGAGPRVNTL LLCSHNETAV 360 IPVYPAYLPP CPGRSMRLYI AVAELYPTVN EDLVMDFDEH DDGDDEEMQQ PMPVSSSYDT 420 PMQPGLVLGG GGGTPKPEDS RGSASFRTAG PGGGDGAGAG TTRYRERGGL HIDALRCATC 480 GCHRNFHRIE SGSPTTAEPA ALLSPAAVTA YGVATQHPFS TYYRTPTGYL YHHQHQQHLA 540 AAAAGHMQRP LALPSTSHSG GRDEGDDVSG MIRPACMVVA PLVGMSLGSG SGGQSGSGMK 600 RFRTKFT

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MHVAVVADVG RQDGRTELLA RSVPRAASLS SGAYMHAAPA PTDRSRGGPT SLHAAYMHGS  60
RRVSVARTSR ALSLLGGRLV TGREGAGART DWQGAVEPDT VARMSTSDRP AVPQKRAVRS  120
SELRPRVETD KPRGKGLCML SSSLVTHACA LLLPPPPNLR IDDQSGLVAS NKPTMHGSWR  180
ARKVGAVRCV PFVGRTITLT PPPPRAAAAT APPSHLVAAT AVPSPLLQCC AGLHRYPVVP  240
VSDATTFTSS LQLPCHREKE RGSRRLDVTV VASETGITGG GDEMRGRHAV VPWRRRHVVV  300
AASKLWFNPL DPKDRMELNQ LLYNPISGDP TESFSGPDGC MGAGPRVNTL LLCSHNETAV  360
IPVYPAYLPP CPGRSMRLYI AVAELYPTVN EDLVMDFDEH DDGDDEEMQQ PMPVSSSYDT  420
PMQPGLVLGG GGGTPKPEDS RGSASFRTAG PGGGDGAGAG TTRYRERGGL HIDALRCATC  480
GCHRNFHRIE SGSPTTAEPA ALLSPAAVTA YGVATQHPFS TYYRTPTGYL YHHQHQQHLA  540
AAAAGHMQRP LALPSTSHSG GRDEGDDVSG MIRPACMVVA PLVGMSLGSG SGGQSGSGMK  600
RFRTKFT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02597.1.g00100.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP48789	2	3