PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02577.1.g00100.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 248aa    MW: 27489.3 Da    PI: 6.5061
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02577.1.g00100.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS255.61.8e-78221297306
                            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                                      aN aI eav+ge+ +HiiDf+i qG QW++++qaLa+Rp+  p+lRiTg+++++s   +   l+ +g+rL+++A+++g
  Zpz_sc02577.1.g00100.1.am.mkhc   2 SANGAIAEAVKGENFIHIIDFQIAQGSQWITMIQALAARPGRRPHLRITGIDDSNSAhaRGGGLNIVGQRLHNIAQSCG 80 
                                     79***************************************************8888889999**************** PP

                            GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                                     ++fefn+ v  + +++ +e+L v+pgEa+aVn+++qlh+++desv +e++rd++L++vkslsP+vv++veqea++n+++
  Zpz_sc02577.1.g00100.1.am.mkhc  81 LSFEFNA-VPAASHEVMFEHLVVRPGEAIAVNFAYQLHHTPDESVGIENHRDRILRMVKSLSPRVVTLVEQEANTNTAP 158
                                     *******.79999999*************************************************************** PP

                            GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                                     F+ r +e+l+yy+a+f+s+++  pr++++ri+ E+++++r+ivn++aceg +r+
  Zpz_sc02577.1.g00100.1.am.mkhc 159 FFLRYMETLDYYTAMFESIDVARPRDDKQRISAEQHCVARDIVNLIACEGWRRE 212
                                     ***************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.9451248IPR005202Transcription factor GRAS
PfamPF035146.2E-762212IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSANGAIAEA VKGENFIHII DFQIAQGSQW ITMIQALAAR PGRRPHLRIT GIDDSNSAHA  60
RGGGLNIVGQ RLHNIAQSCG LSFEFNAVPA ASHEVMFEHL VVRPGEAIAV NFAYQLHHTP  120
DESVGIENHR DRILRMVKSL SPRVVTLVEQ EANTNTAPFF LRYMETLDYY TAMFESIDVA  180
RPRDDKQRIS AEQHCVARDI VNLIACEGWR REMVSFILAG RTESLSYLLR GADVSTEACL  240
GSFVALCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-39120795299GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02577.1.g00100.1.am.mkhc
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791443.11e-141scarecrow-like protein 21
RefseqXP_025791444.11e-141scarecrow-like protein 21
RefseqXP_025791446.11e-141scarecrow-like protein 21
RefseqXP_025791447.11e-141scarecrow-like protein 21
SwissprotQ9LDL71e-101PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A3L6S4051e-140A0A3L6S405_PANMI; Scarecrow-like protein 21
STRINGSi035089m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-104GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]