PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02445.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 185aa MW: 20709.4 Da PI: 5.7006

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02445.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58.4	2.1e-18	24	84	2	62
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslv 62 C aCk++rrkC++dCv+apyf e++++fa++ + Gasnv k+l +++++er +a++ v Zpz_sc02445.1.g00040.1.sm.mk 24 CVACKHMRRKCEPDCVFAPYFGPEDEERFAVMDRGIGASNVAKMLGRIDPQERAHAIDMFV 84 *****************************************************99987554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.3	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.2E-18	24	87	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSEATRPSEE VSAAPESEPQ SQDCVACKHM RRKCEPDCVF APYFGPEDEE RFAVMDRGIG 60 ASNVAKMLGR IDPQERAHAI DMFVAAAIQG MPAERPPWTV SLEEQQLAAF LVERPQNRPP 120 RTLIMLEQAR HENQQMAEAA NSNVLSGRQN QHSSTVCGEQ PRLAALVRIR TTRSLLITDR 180 SYYIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-16	13	81	1	69	LOB family transfactor Ramosa2.1
5ly0_B	1e-16	13	81	1	69	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02445.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP47455	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	8e-18	LOB domain-containing protein 24