PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02343.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 771aa MW: 82174.5 Da PI: 10.549

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02343.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.9	8.4e-20	513	559	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca +Cv+apyfp ++p+kfanvh++FGasnv+kll+ Zpz_sc02343.1.g00020.1.am.mk 513 PCAACKLLRRRCAVGCVFAPYFPPAEPHKFANVHRIFGASNVSKLLQ 559 7********************************************98 PP
2	DUF260	53.6	6.5e-17	644	696	48	100
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++p ++r da+sslvyeA+ar+rdPvyG+v+ i++lqqq+e+l+a+lal+++e Zpz_sc02343.1.g00020.1.am.mk 644 EIPVQHRGDAVSSLVYEANARVRDPVYGCVAAISSLQQQVETLQAQLALAQAE 696 578999*******************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.716	512	629	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-19	513	559	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-14	643	694	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MHMIRGSLTW RTKAGAIFNL IDVVVAMAAE AAINTIAMAA AMARGVAITA IAVAAAMAAR 60 AAISTITVVA AMAAEAAIIT IAVVAAMAAE AAIITIIVVA VMVSEAATFG IVLKMAMALG 120 MVILAGCKEE DMVVVEILKI GEEASLEAGL GAVSSSCALH GTGEKSLFVI SLWTFLLYSL 180 HMRLRTASVL VPRGSRGTTA GGFYRQGNVL GAMPAGSVRP HLRRRRSVSL PVATTRWRCF 240 LCRQATPIAH KWEYSSLLNR RRDRGVLGED RERAKAGDPK HGWVSPKGKR GKRRCASSGH 300 HRGGLVVVGG CPRRPAAVLS LYSSTAGRHS RRSERKKERS RAIGGWKKGT RVGGMHDGTA 360 AARSLSVWCP YQTSLSQLPM SSPTLCELFP SLSVVCGHVL CTFRRLLCSP PVSLYLCMPA 420 GLRWDRKGAR LQLLLLQKDP SRPTCPVLAC NYQRSQPPNL ATTIHIGGQQ SRAWTLRFRG 480 HAVLSFLAMK DEAAVGGGRA AGAGGGGATA AAPCAACKLL RRRCAVGCVF APYFPPAEPH 540 KFANVHRIFG ASNVSKLLQV RAANSLLAGC FGYRLACSDR DRASVFSSNL HADGAGTNSP 600 YVAHRLFPAG YVRKKLQVHH RAAAPASTDT PWCFSANLAC STIEIPVQHR GDAVSSLVYE 660 ANARVRDPVY GCVAAISSLQ QQVETLQAQL ALAQAEMVRL NMNNAYMAHR LKKARSIGGG 720 GGGSSTNTGS PSSMSSPKME QPETHCKATP ELLDMVVDQP YSMDDSQLWS Y

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MHMIRGSLTW RTKAGAIFNL IDVVVAMAAE AAINTIAMAA AMARGVAITA IAVAAAMAAR  60
AAISTITVVA AMAAEAAIIT IAVVAAMAAE AAIITIIVVA VMVSEAATFG IVLKMAMALG  120
MVILAGCKEE DMVVVEILKI GEEASLEAGL GAVSSSCALH GTGEKSLFVI SLWTFLLYSL  180
HMRLRTASVL VPRGSRGTTA GGFYRQGNVL GAMPAGSVRP HLRRRRSVSL PVATTRWRCF  240
LCRQATPIAH KWEYSSLLNR RRDRGVLGED RERAKAGDPK HGWVSPKGKR GKRRCASSGH  300
HRGGLVVVGG CPRRPAAVLS LYSSTAGRHS RRSERKKERS RAIGGWKKGT RVGGMHDGTA  360
AARSLSVWCP YQTSLSQLPM SSPTLCELFP SLSVVCGHVL CTFRRLLCSP PVSLYLCMPA  420
GLRWDRKGAR LQLLLLQKDP SRPTCPVLAC NYQRSQPPNL ATTIHIGGQQ SRAWTLRFRG  480
HAVLSFLAMK DEAAVGGGRA AGAGGGGATA AAPCAACKLL RRRCAVGCVF APYFPPAEPH  540
KFANVHRIFG ASNVSKLLQV RAANSLLAGC FGYRLACSDR DRASVFSSNL HADGAGTNSP  600
YVAHRLFPAG YVRKKLQVHH RAAAPASTDT PWCFSANLAC STIEIPVQHR GDAVSSLVYE  660
ANARVRDPVY GCVAAISSLQ QQVETLQAQL ALAQAEMVRL NMNNAYMAHR LKKARSIGGG  720
GGGSSTNTGS PSSMSSPKME QPETHCKATP ELLDMVVDQP YSMDDSQLWS Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-21	510	699	8	113	LOB family transfactor Ramosa2.1
5ly0_B	6e-21	510	699	8	113	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02343.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069911	2e-98	BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBank	KJ727650	2e-98	KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP35252	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-19	LBD family protein