PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02307.1.g00020.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 171aa MW: 18406.3 Da PI: 6.0225

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02307.1.g00020.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	173.8	1.8e-54	24	119	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyvep Zpz_sc02307.1.g00020.1.sm.mk 24 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETIQECVSEFISFVTGEASDKCRKEKRKTVNGDDVCWAFGALGFDDYVEP 104 89***************************************************************************** PP NF-YB 83 lkvylkkyrelegek 97 ++ yl+++re+eg++ Zpz_sc02307.1.g00020.1.sm.mk 105 MRRYLHRFREVEGDR 119 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.3E-50	19	130	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-38	26	135	IPR009072	Histone-fold
Pfam	PF00808	1.5E-26	29	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.3E-16	57	75	No hit	No description
PROSITE pattern	PS00685	0	60	76	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.3E-16	76	94	No hit	No description
PRINTS	PR00615	2.3E-16	95	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MADHLGQPDD DGRRAAGSAA EEIKEQDRLL PIANVGRIMK QILPPNAKIS KEAKETIQEC 60 VSEFISFVTG EASDKCRKEK RKTVNGDDVC WAFGALGFDD YVEPMRRYLH RFREVEGDRA 120 AAAASSRGAG EGPDHHTSGS GAGGAGPSGT GHFMFGAMDR SDNSTSSSRQ F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-44	23	114	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02307.1.g00020.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU970198	1e-131	EU970198.1 Zea mays clone 342117 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635864.1	9e-77	nuclear transcription factor Y subunit B-1
Refseq	XP_015635872.1	9e-77	nuclear transcription factor Y subunit B-1
Swissprot	O82248	2e-55	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
Swissprot	Q75IZ7	4e-55	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0E0JTD0	1e-79	A0A0E0JTD0_ORYPU; Uncharacterized protein
STRING	OPUNC01G42210.1	2e-80	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-56	nuclear factor Y, subunit B5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]