PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02280.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 262aa MW: 29175.6 Da PI: 10.2517

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02280.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.9	8.9e-33	108	166	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d vv++tYeg+H+h+ Zpz_sc02280.1.g00010.1.am.mk 108 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHQGCNVKKQVQRLSKDDGVVVTTYEGTHTHP 166 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-33	93	166	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-29	100	167	IPR003657	WRKY domain
PROSITE profile	PS50811	29.941	103	168	IPR003657	WRKY domain
SMART	SM00774	3.8E-39	108	167	IPR003657	WRKY domain
Pfam	PF03106	8.1E-27	109	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MESNYHPMLF VTQPFSSTSS SHHFMAGSGT SSHDHDRRGS FLGAPSNSKE GYGASLPGRR 60 DDIQETPAGG PAGDDADRSG GVAGKKKGAK KERRPKYAFQ TRSAVDVLDD GYRWRKYGQK 120 AVKNNRFPRS YYRCTHQGCN VKKQVQRLSK DDGVVVTTYE GTHTHPIEKS NDNFEHILTQ 180 MQIYSGVGGS GFSSSPMFPQ RWNQPDGHVP LRHRPHATAE EFVACPPHPP PLHLPLLLLV 240 QAARARSSLI QSRSIHPYPF RR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-25	98	167	7	76	Probable WRKY transcription factor 4
2lex_A	3e-25	98	167	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02280.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF368363	4e-88	EF368363.1 Triticum aestivum WRKY transcription factor (WRKY72-b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826644.1	6e-83	probable WRKY transcription factor 12 isoform X1
Refseq	XP_025826645.1	3e-83	probable WRKY transcription factor 75 isoform X2
TrEMBL	A0A2S3IEZ6	7e-82	A0A2S3IEZ6_9POAL; Uncharacterized protein
STRING	Si026859m	7e-82	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	4e-54	WRKY DNA-binding protein 75