PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02242.1.g00040.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 345aa    MW: 38045.1 Da    PI: 9.7615
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02242.1.g00040.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind388.79e-119243451300
                       GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68 
                                     md+ g+re  r+++ +y+        p++++k++ +++l+++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+a
  Zpz_sc02242.1.g00040.1.am.mkhc  24 MDNLGHREngRQRPdQYKamhtewmmPQRQIKDHHSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMA 102
                                     9999*99999****99*99****999889************************************************** PP

                       GAGA_bind  69 ernkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse.pqledsave.lreeeklealpieeaae 142
                                     ern+a+verdn+l+al+l++++     + +++ ++ l+gtk+i++++ +s   ql+ds+++ ++e++++ea+pi+ a+ 
  Zpz_sc02242.1.g00040.1.am.mkhc 103 ERNAAIVERDNALAALELARTNGLnmnNGSGFHQGPLNGTKNIHHSHVQSSpLQLADSPYDhAKEMHISEAYPISAAPG 181
                                     ****************99888765555778889999**********9977769********999*************** PP

                       GAGA_bind 143 eakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsC 215
                                     ++ + kk+ k++++++p+++ +    k++++++k+   ++a e+      sk+e+k++dl+ln+vs+Dest+P+P+CsC
  Zpz_sc02242.1.g00040.1.am.mkhc 182 SVGKGKKPTKNHSQASPLKRPSGVLGKTKKTNWKNGGLSGAGEDsarasaSKNEWKDQDLGLNQVSYDESTMPAPACSC 260
                                     **********************9777777778887776665533456777***************************** PP

                       GAGA_bind 216 tGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
                                     tG l+qCYkWGnGGWqS+CCt++iS+yPLPv+++rr+aR++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWAkHGt
  Zpz_sc02242.1.g00040.1.am.mkhc 261 TGELHQCYKWGNGGWQSSCCTMSISMYPLPVMPNRRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGT 339
                                     ******************************************************************************* PP

                       GAGA_bind 295 nkfvti 300
                                     n+++ti
  Zpz_sc02242.1.g00040.1.am.mkhc 340 NRYITI 345
                                     *****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.1E-15724345IPR010409GAGA-binding transcriptional activator
PfamPF062173.3E-9524345IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVIRDLLPVG WKGLISWLQE GIKMDNLGHR ENGRQRPDQY KAMHTEWMMP QRQIKDHHSM  60
NLLALMNEKD SAIRERDHAL AEKKAAIAER DMAFAQRDAA MAERNAAIVE RDNALAALEL  120
ARTNGLNMNN GSGFHQGPLN GTKNIHHSHV QSSPLQLADS PYDHAKEMHI SEAYPISAAP  180
GSVGKGKKPT KNHSQASPLK RPSGVLGKTK KTNWKNGGLS GAGEDSARAS ASKNEWKDQD  240
LGLNQVSYDE STMPAPACSC TGELHQCYKW GNGGWQSSCC TMSISMYPLP VMPNRRHARM  300
GGRKMSGGAF TKLLSRLAAE GHDLSTPVDL KDHWAKHGTN RYITI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02242.1.g00040.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141822.10.0BBR/BPC transcription factor
RefseqXP_008658294.10.0BBR/BPC transcription factor isoform X1
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A3L6DC170.0A0A3L6DC17_MAIZE; Barley B recombinant-like protein D
TrEMBLB4FYC00.0B4FYC0_MAIZE; BBR/BPC transcription factor
STRINGGRMZM2G118690_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.14e-95basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]