PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02146.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 528aa    MW: 57327.6 Da    PI: 4.5707
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02146.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS118.86.8e-371473383191
                          GRAS   3 elLlecAeavssgdlelaqalLarlsel....aspdgd...........pmqRlaayfteALaarlarsvselykalppse 68 
                                   +lL++cA av+++d + a+a+L+r+  l    +    +           +   la yf+++L++r+++   +  +    ++
  Zpz_sc02146.1.g00060.1.am.mk 147 NLLVACAMAVEARDSTTASAILSRVDSLlthgV----ShrsyhhaavdsASDILAGYFARGLHSRMSS---GARR----TA 216
                                   79**********************998855432....222345566666888999************9...2222....22 PP

                          GRAS  69 tseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147
                                   +++   ++++ a+++++e+sP++kf+h+taNqaIlea++ +    +H++D+++++G+QW++L+  La R++g+ ++R+T+v
  Zpz_sc02146.1.g00060.1.am.mk 217 AAPALPENRMPAYRALQELSPFIKFAHFTANQAILEAAAADngPDLHVVDLNVGEGVQWASLMADLA-RTGGKSTFRLTAV 296
                                   22233567899*************************998886789*********************9.68*********** PP

                          GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                                         ++ +    ++ L++fAe+l++pf+++ l+ ++ edl+ 
  Zpz_sc02146.1.g00060.1.am.mk 297 ITDP--DAGRGCMAARWLSEFAESLNLPFRYSSLHLRDEEDLHS 338
                                   9932..66666777888****************98877777654 PP
2GRAS468.7e-15359463260373
                          GRAS 260 aleyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                                   al++++a++dsl++++           vEre+lg +i+++va  +a+            +  ++ G++p  ls+++++qak
  Zpz_sc02146.1.g00060.1.am.mk 359 ALHHFAAVLDSLASGFCDGGygACLDLVEREMLGLRIEDAVARYQAA-----------AMTGDMQGLRPCDLSSFNVAQAK 428
                                   89**********999988877788899****************9999...........3455789**************** PP

                          GRAS 339 lllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                                   +l+  ++ +g+ v  ee g l l+W++rpL+svS+W
  Zpz_sc02146.1.g00060.1.am.mk 429 MLVGLFS-RGFGVVhEEAGRLALCWNSRPLTSVSVW 463
                                   *******.99987648899999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.226119528IPR005202Transcription factor GRAS
PfamPF035142.4E-34147338IPR005202Transcription factor GRAS
PfamPF035143.0E-12359463IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MVLSRLLLVY IRRLCEPTDP RQFFLIRQQQ METMSYPSSP FIPFLPTHHE ESSYSYLLWS  60
HQGAIAGPET GNMCDAHPIP SPDEQQDDNE LIDMLFREAS YLLQDDLSNG GDPFASLDGC  120
LCLAGQENIS MVATVQEEPM EGDSLGNLLV ACAMAVEARD STTASAILSR VDSLLTHGVS  180
HRSYHHAAVD SASDILAGYF ARGLHSRMSS GARRTAAAPA LPENRMPAYR ALQELSPFIK  240
FAHFTANQAI LEAAAADNGP DLHVVDLNVG EGVQWASLMA DLARTGGKST FRLTAVITDP  300
DAGRGCMAAR WLSEFAESLN LPFRYSSLHL RDEEDLHSFA AESCNDSPVI ISCDTTDYAL  360
HHFAAVLDSL ASGFCDGGYG ACLDLVEREM LGLRIEDAVA RYQAAAMTGD MQGLRPCDLS  420
SFNVAQAKML VGLFSRGFGV VHEEAGRLAL CWNSRPLTSV SVWSRPVLDP GVAMPCPVND  480
TSDLRSIDAE VSRTQVANQA VLFRALVFGF SAGGEMSTCR TEVARTDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-2313646410379Protein SCARECROW
5b3h_A1e-221364649378Protein SCARECROW
5b3h_D1e-221364649378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02146.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809510.11e-158nodulation-signaling pathway 2 protein-like isoform X1
TrEMBLA0A3L6R6F61e-156A0A3L6R6F6_PANMI; Nodulation-signaling pathway 2 protein-like
STRINGPavir.Ca00212.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.13e-26RGA-like protein 3