PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01974.1.g00080.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 385aa MW: 40667.5 Da PI: 6.8925 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.6 | 0.00025 | 281 | 314 | 16 | 54 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ L++l+ + +K + a++L +++eYIk L Zpz_sc01974.1.g00080.1.sm.mkhc 281 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 314 555666677777776.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.363 | 265 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-10 | 275 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.53E-4 | 275 | 318 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-7 | 275 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MGDHAEMLHA APAMYNAAGV AAPHGGWWNT AVSAAATCST ELAGFSTWSS ALAASYDMAA 60 EGAKAKSATT ASSGSPGNNS SVTFQEPTAG IADAAGVGAA VQQPLASFTE WAHLMNNAGV 120 TLHGFLQDDL RDMSSRTDQQ SYINAPSLMN PSSNNLALQG HHEQDHGPQQ LLSNLGSELL 180 LSPTSPYGIQ SSLLRSLMEP TAAVAKPALP PGFQQHDQYG QQMGQAAAAA RFTPPLQFTN 240 DAAFWNPYAG NKKANGQPAL KKPRLETPSP LPTFKVRKEK LGDRVTALQQ LVAPFGKTDT 300 ASVLHETIEY IKFLHDQVGA LSAPYLKNGH QVPHLKSSSP DKSKDGHGEV SLKGRGLCLV 360 PISSTFAVAS EVPVDFWNPF GANFR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01974.1.g00080.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822972.1 | 0.0 | transcription factor bHLH112-like | ||||
TrEMBL | A0A1E5VU63 | 0.0 | A0A1E5VU63_9POAL; Transcription factor bHLH112 | ||||
STRING | Si010139m | 1e-180 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 5e-48 | bHLH family protein |