PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01747.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 361aa    MW: 38096.4 Da    PI: 5.4386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01747.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.85.9e-06335357729
                                   HHHHHHHHHHHHHHHHHHCTSCC CS
                           HLH   7 erErrRRdriNsafeeLrellPk 29 
                                   + ErrRR+++N++++ Lr+ +P 
  Zpz_sc01747.1.g00010.1.am.mk 335 MSERRRRKKLNDRLFMLRSAMPR 357
                                   78*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-5322359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.083328361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-4330361No hitNo description
Gene3DG3DSA:4.10.280.101.4E-4335358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLRQLDNPSW MQDECQEQGQ QQQHAPPPTM GPGMILAQGQ EEQNLMAQAA ATAGNMRFRA  60
HGMLDNDWYL DGMAAGAGAS AAAGTQLSLL PAQPAQAGGS TFTSAGSQMF SPFNMGTAGP  120
FDLHEFDIGL SDRGGNDGDL SSIVGNASNS SSVSLIPSGN AGSLGSFGGF ATAPMQMQEL  180
SRFGGFDVFN NGPGSSSMPP PASASLSTPL AARSKAALLR PLEIIPSVDA QPLLFEKRAV  240
RRNTGEEEHD KKHKAAVSVG VSSGDDTLLL DDGGDDGLKI DASRLNYDSE DIKGIEESDK  300
KNTKDANANT NSTVTAGCTG DSKCRKKGLQ ANNLMSERRR RKKLNDRLFM LRSAMPRISK  360
V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324342RKKGLQANNLMSERRRRKK
2336343ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01747.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449578.11e-82transcription factor SCREAM2
TrEMBLA0A482KF714e-93A0A482KF71_9POAL; ICE1
STRINGSb05g019530.15e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.45e-14bHLH family protein