PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01746.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 331aa    MW: 36626.8 Da    PI: 6.7178
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01746.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.55.8e-1041132675374
                          GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgsk 155
                                   +e +aa++ f +++P+l+++  +aNq +lea+e e+ vH++D++    +QW+ Ll+ La+Rpegpp+lR+T+v++    +k
  Zpz_sc01746.1.g00050.1.am.mk  11 AELVAARRHFLDLCPFLRLAGAAANQSVLEAMEAEKIVHVVDLGGADATQWLELLHLLAARPEGPPHLRLTAVSE----HK 87 
                                   677899999******************************************************************....9* PP

                          GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.....................d 215
                                   + l +t+  L+k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gEala+ ++lqlh ll                     +
  Zpz_sc01746.1.g00050.1.am.mk  88 DVLTQTAMALSKEAERLDVPFQFNP-VVTRLDALDVESLRVKTGEALAITSSLQLHCLLasdddtaaggkdkkenrrspeS 167
                                   *************************.79************************************************99752 PP

                          GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                                      +++s+ d++L+++++lsPkv+vv+eqea+hn++ + erf+eal+yy+alfd+le+ ++r s er+ vEr +lg+ei+n
  Zpz_sc01746.1.g00050.1.am.mk 168 GLSPSTSRADAFLSALWGLSPKVMVVTEQEASHNAPALTERFVEALNYYAALFDCLEVVAARGSVERARVERWMLGEEIKN 248
                                   2233444789*********************************************************************** PP

                          GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   +vac gaerrerhe+l +W +r+e aGF+ vpls++a  qa++  +  + dg++v ee+gs++l+W+dr++++vSaWr
  Zpz_sc01746.1.g00050.1.am.mk 249 IVACDGAERRERHERLDRWARRMEGAGFGRVPLSYYALLQARRAAQGLGCDGFKVREEKGSFFLCWQDRAIFTVSAWR 326
                                   *****************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.1391306IPR005202Transcription factor GRAS
PfamPF035142.0E-10111326IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
LLLPRAAPTP AELVAARRHF LDLCPFLRLA GAAANQSVLE AMEAEKIVHV VDLGGADATQ  60
WLELLHLLAA RPEGPPHLRL TAVSEHKDVL TQTAMALSKE AERLDVPFQF NPVVTRLDAL  120
DVESLRVKTG EALAITSSLQ LHCLLASDDD TAAGGKDKKE NRRSPESGLS PSTSRADAFL  180
SALWGLSPKV MVVTEQEASH NAPALTERFV EALNYYAALF DCLEVVAARG SVERARVERW  240
MLGEEIKNIV ACDGAERRER HERLDRWARR MEGAGFGRVP LSYYALLQAR RAAQGLGCDG  300
FKVREEKGSF FLCWQDRAIF TVSAWRGRRF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-501232893380Protein SCARECROW
5b3h_D2e-501232893380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01746.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875400.0AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence.
GenBankAP0032590.0AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819415.10.0scarecrow-like protein 3
RefseqXP_025819416.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-128SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2S3HN370.0A0A2S3HN37_9POAL; Uncharacterized protein
TrEMBLA0A2T7DBR70.0A0A2T7DBR7_9POAL; Uncharacterized protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-114scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]