PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01734.1.g00040.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 489aa    MW: 53534.8 Da    PI: 10.0567
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01734.1.g00040.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.7e-067193123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ++C+ Cgk F r  nL+ H r H
  Zpz_sc01734.1.g00040.1.am.mkhc 71 FVCEVCGKGFQRDQNLQLHRRGH 93
                                    89*******************88 PP
2zf-C2H217.51.2e-05149171123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++Cp Cgk++  + +Lk H +t+
  Zpz_sc01734.1.g00040.1.am.mkhc 149 WTCPRCGKRYAVQADLKAHAKTC 171
                                     58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.77E-87093No hitNo description
Gene3DG3DSA:3.30.160.601.0E-57193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0147193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6357193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355180114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.77E-8144169No hitNo description
SMARTSM0035563149169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704149177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
EAASGARRER GGRQIERERM TRNPTEPEAG PGPAEAPAAP VKKKRNLPGT PDPEAEVIAL  60
SPGTLLATNR FVCEVCGKGF QRDQNLQLHR RGHNLPWRLR QRGPGAAPPR RRVYVCPEPG  120
CVHHCPRRAL GDLTGIKKHF CRKHGEKRWT CPRCGKRYAV QADLKAHAKT CGTREYRCDC  180
GTLFTRRDSF VTHRAFCGAL VEETGRALTV PAPPSPHPPD LEAEENVEKD KEKREEEKND  240
NSAVAEKEQP PRVEAATQKP PRIPSPPPLP KEPQHPQYNP SPTPVAQDPL PLRSRPLLHL  300
EPQPLHSRPP FPKEHHQPVV ALLPNVDAPH MSATALLQKA TEVGASQSSS SFLKEFGLGS  360
SSSSSPPSKP RSRQQQHRGS NQQMEMELRN QQMEMNPRPM LSSSLGLGLA YQSGNSAMPD  420
LMMGPSPLFG PKPATLDFLG LGIGGTIGSS TANGGLPALM MRGELDMGSA QSRAPWDDGK  480
RKTNGRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-29145206364Zinc finger protein JACKDAW
5b3h_F1e-29145206364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01734.1.g00040.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663580.0BT066358.1 Zea mays full-length cDNA clone ZM_BFc0009B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460921.11e-132ATM interactor
TrEMBLA0A1E5VQB01e-131A0A1E5VQB0_9POAL; Zinc finger protein MAGPIE
TrEMBLC5XCG01e-130C5XCG0_SORBI; Uncharacterized protein
STRINGSb02g037550.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3317522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-93C2H2 family protein