PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01679.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 340aa MW: 35270.7 Da PI: 7.2125

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01679.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	246	268	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Zpz_sc01679.1.g00020.1.am.mk 246 HECSICGAEFASGQALGGHMRRH 268 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.3E-11	136	161	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.21E-8	136	159	No hit	No description
SMART	SM00355	0.11	137	159	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.263	137	164	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.21E-8	241	268	No hit	No description
Pfam	PF13912	1.5E-12	245	269	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	246	268	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.429	246	273	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	248	268	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MGGVRQEKEA AAPPTALVPA VVVKGKRSKR QRVHAPPLVL TAAAAEWSSS AASATAASAE 60 EDSGTSTPSA DDAASTNGCV TEEEEDMALC LVLLSRGEPA VAKEKVRKEG GEVAVVKEAR 120 FRSRRPADGA GAGEFVYECK TCNKCFPSFQ ALGGHRTSHK KPRLLPPVPP SSSDDKNSPA 180 AVETTTTTTA PSHPPSPPPA AQETPDATTA LLGNLPAVPA APLPKQEPGA TVSATASSSS 240 RHPRVHECSI CGAEFASGQA LGGHMRRHRP LVPAAARVDE APRKERSLLE LDLNMPAPCD 300 EAETSVTSPR FVFPVDAKPQ QAPPPLFPAT AASALVGCHY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01679.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108645	3e-52	AK108645.1 Oryza sativa Japonica Group cDNA clone:002-148-B03, full insert sequence.
GenBank	AL606603	3e-52	AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence.
GenBank	AL606654	3e-52	AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence.
GenBank	AP014960	3e-52	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	3e-52	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CT833697	3e-52	CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.
GenBank	CU405777	3e-52	CU405777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113D03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975056.3	1e-106	zinc finger protein ZAT5-like
TrEMBL	A0A3L6PT03	1e-109	A0A3L6PT03_PANMI; Zinc finger protein ZAT5-like
STRING	Pavir.J13454.1.p	1e-104	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-16	C2H2 family protein