PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01557.1.g00020.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 402aa MW: 42939 Da PI: 6.0182 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.7e-11 | 187 | 263 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC.............................TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas..........................kapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++N++f eL +++P++ s ++Ka+iL A++Y+k+Lq Zpz_sc01557.1.g00020.1.sm.mk 187 HIIAERKRREKMNQRFIELSTVIPNLRkvrikpkslvstclkstpdtgiaqrkWFFSDQMDKATILSAATRYVKDLQ 263 899**********************777*********************9988566788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.389 | 182 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-14 | 186 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 187 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.47E-11 | 187 | 266 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.5E-16 | 187 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-12 | 188 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-14 | 243 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MEDSSLFMQW AMTTLHHEHQ QAVAVDDDCG EATTFPSLQA LREASQAAEM IQELIAVDAE 60 DHPANSWSSS DGDATDGSSA DNNNNLAPAA VHHDICPVSS PSNPVARRVV DPSRNVAGSG 120 TSSPVTWNFS AAAAAAQTSG DYGDGMLTET AAATRGPRPD LAYGSLPVRR AGVKSSGFIA 180 ATYMQGHIIA ERKRREKMNQ RFIELSTVIP NLRKVRIKPK SLVSTCLKST PDTGIAQRKW 240 FFSDQMDKAT ILSAATRYVK DLQEKLNELE AGGRGSHGRS VESETVVVVK RPYPHAATAA 300 HDGDGSPLSA SSGTPAAASK QLPEIEARFT NKSVMVRIHC ENGKAVVVKV LAEIEELHLG 360 IIHANVEEGF PVTAEDIVSR LNSVLLPPVH SSCSSPELET GN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 195 | ERKRRE |
2 | 191 | 196 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01557.1.g00020.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140919.1 | 1e-125 | uncharacterized protein LOC100272997 | ||||
Refseq | XP_020403288.1 | 1e-125 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
Refseq | XP_020403289.1 | 1e-125 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
TrEMBL | A0A2S3IJF2 | 1e-124 | A0A2S3IJF2_9POAL; Uncharacterized protein | ||||
TrEMBL | B4FS75 | 1e-124 | B4FS75_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G120021_P01 | 1e-124 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 8e-26 | bHLH family protein |