PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc01489.1.g00160.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 389aa MW: 41742.2 Da PI: 11.2533 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.9 | 2.3e-27 | 45 | 90 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k+ien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+l Zpz_sc01489.1.g00160.1.am.mk 45 KPIENATNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRL 90 78******************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.469 | 37 | 90 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-32 | 37 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.75E-33 | 39 | 90 | No hit | No description |
PRINTS | PR00404 | 2.3E-26 | 39 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-24 | 39 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-24 | 47 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 59 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 74 | 95 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MLNMMSQTDL SCCPSKVKEQ PAPANSGPSS GSTKPGIIRG RIEIKPIENA TNRQVTFCKR 60 RNGLLKKAYE LSVLCDAEVA LVVFSSRGRL TMPGACVALL QGSQKPKPMA AAAAAEEKRG 120 ACIASGDDTS KESWCLGGNA KSREAPLHVG VKATIERYKK ANSDSSNTGT VAEVNAQTTR 180 IIRLAVKQSK SRRGCWAKRC GAVDRPAAAQ PGMTSLWAGA SKWTGCSATT GQFSRRKKAT 240 GQAANRDGAR SPPASRCPLP SATSATLIRQ TSGRIRFHSR LAMHATRDDD LRPPLVGLLE 300 RHRLRRRGAV RAARCRGRER VADLLRGVGE PGAGHRVEXX XXFASASWML MFGPPNAPPL 360 PAALKKWPML LLGNRPPMAD QISIGCDLQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc01489.1.g00160.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ430637 | 7e-57 | AJ430637.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m23 gene). | |||
GenBank | EU960810 | 7e-57 | EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP34716 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18960.1 | 5e-34 | MIKC_MADS family protein |