PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01479.1.g00170.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 571aa MW: 63636.7 Da PI: 4.9682 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 424.5 | 8.6e-130 | 202 | 571 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 ++lL++cA +s+ ++ +aqa++++l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ + + +l+a Zpz_sc01479.1.g00170.1.am.mkhc 202 KQLLFDCAMSLSEYNTDEAQAIITKLRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSA 277 589*****************************************************************9...89999** PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157 +++++e++P++++++++aN aIlea++geervHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++ Zpz_sc01479.1.g00170.1.am.mkhc 278 MQILFEICPCFRLGFMAANYAILEAFKGEERVHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVqrPIGG 356 ***********************************************************************99878899 PP GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 l+ +g+rL+k+Ae +gv+fef++ v ++ d+++ +L+++pgE l++n+++qlh+l+desvs+ +erd++L++vk+l+P Zpz_sc01479.1.g00170.1.am.mkhc 357 LRVIGQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCRPGEGLVINFAFQLHHLPDESVSIMNERDQLLRMVKGLQP 434 ***********************.799**************************************************** PP GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 k+v++veq+a++n+++Fl+rf e +yy+alfdsl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kW Zpz_sc01479.1.g00170.1.am.mkhc 435 KLVTLVEQDANTNTAPFLTRFREVYDYYAALFDSLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKW 513 ******************************************************************************* PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+r+++aGFkp p+++++ + +++ll+ + ++ y+ ee++g l +gW +++L++ SaW+ Zpz_sc01479.1.g00170.1.am.mkhc 514 RARMTMAGFKPCPFNSNVISGIRSLLKSYCDR-YKFEEHHGGLHFGWGEKSLIVSSAWQ 571 ******************************66.*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.923 | 175 | 552 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-127 | 202 | 571 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MSFVRRVDPS TAYSDNLYVH KFASPSSNFS PRRFGSDTQL FRYGPEPYNA EYGHMSFTGA 60 PSAEFQNSLC SQQASLTAYR ITADGLSTTV EDIQSNSCSD VAKNSPVLSN VSQQNSQSAS 120 DSQSSGIEVE FDDDEMRLKL QELEHALLGD GDDILFEISQ TGSINDEWAD PMKNVLTPTS 180 PKDSESSVSC AVSNNRATRT PKQLLFDCAM SLSEYNTDEA QAIITKLRQM VSIQGDPSQR 240 IAAYLVEGLA ARIVASGKGI YKALTCKDPP TLYQLSAMQI LFEICPCFRL GFMAANYAIL 300 EAFKGEERVH IIDFDINQGS QYITLIQFLK NNANKPRHLR ITGVDDPETV QRPIGGLRVI 360 GQRLEKLAED CGVSFEFRAV GANIGDVTPA MLDCRPGEGL VINFAFQLHH LPDESVSIMN 420 ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FLTRFREVYD YYAALFDSLD ATLPRESPDR 480 MNVERQCLAR EIVNILACEG PDRVERYEVA GKWRARMTMA GFKPCPFNSN VISGIRSLLK 540 SYCDRYKFEE HHGGLHFGWG EKSLIVSSAW Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-62 | 208 | 570 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-62 | 208 | 570 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01479.1.g00170.1.am.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF534704 | 0.0 | EF534704.1 Aeluropus littoralis scarecrow gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819107.1 | 0.0 | scarecrow-like protein 1 isoform X1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2T7DDM8 | 0.0 | A0A2T7DDM8_9POAL; Uncharacterized protein | ||||
STRING | Si000832m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5175 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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