PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01466.1.g00120.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 405aa    MW: 43066.2 Da    PI: 7.7291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01466.1.g00120.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-14186232455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y++ Lq
  Zpz_sc01466.1.g00120.1.sm.mk 186 DHIIAERRRREKINQRFIELSTVVPGL-----KKMDKATILGDAVKYVRVLQ 232
                                   5999***********************.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.688182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-18186240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-12187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-15187236No hitNo description
SuperFamilySSF474597.2E-17187240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDDSSMFLQW AMNQLHQHPA AAAAPGAPAY QNGGGGAGDR EAAYPSLQAL RNATQPAPQT  60
AAAAAVRVRD LTVQVDHRTN SNSWSSGDSP GAAMDYDTAT GWSPHTAHAS TIGLGGGSSN  120
SRPVSWNFSA ASAQPTTDDG GRSDDVALPD AATAARALHA STGRRGGSSG PAAATAASSS  180
PGPVQDHIIA ERRRREKINQ RFIELSTVVP GLKKMDKATI LGDAVKYVRV LQDKVKTLEK  240
DGVHGAGGTI QSTVLVKKPC RVPDDEGAAS NGGLQQLPEI EARLSDKSIL LRIHCDNERG  300
LLVKVLSEVE KMSLAITHTN MEEGFNTTVD DIVRRINSVL HQHFRAIYQR FVPGISTLID  360
TEVPCNAVMD VFQNWVPTKG EMSPGIVLSG CRARTQGSRE LTHFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195ERRRRE
2191196RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01466.1.g00120.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126203e-31CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808672.11e-145transcription factor bHLH25-like
RefseqXP_025808673.11e-145transcription factor bHLH25-like
RefseqXP_025808674.11e-145transcription factor bHLH25-like
RefseqXP_025808675.11e-145transcription factor bHLH25-like
TrEMBLA0A2T7EJP41e-145A0A2T7EJP4_9POAL; Uncharacterized protein
STRINGSb08g022760.11e-136(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-38bHLH family protein