PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01465.1.g00100.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 680aa    MW: 72925.2 Da    PI: 7.4631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01465.1.g00100.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057496123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ++C+ Cgk F r  nL+ H r H
  Zpz_sc01465.1.g00100.1.sm.mkhc 74 FVCEVCGKGFQRDQNLQLHRRGH 96
                                    89*******************88 PP
2zf-C2H212.40.00047153174223
                                     EETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                      Cp Cgk++  + + k H +t+
  Zpz_sc01465.1.g00100.1.sm.mkhc 153 ACPRCGKRYAVQADVKAHAKTC 174
                                     6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.97E-87396No hitNo description
Gene3DG3DSA:3.30.160.601.5E-57496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0147496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6357496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035577117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.97E-8147172No hitNo description
SMARTSM00355180152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MTRNSMEPEA GHEHPGPGPA EAPSAAAPVK KKRNLPGTPV LLAPAASAPC APAADPDAEV  60
IALSPGTLLA TNRFVCEVCG KGFQRDQNLQ LHRRGHNLPW RLRQRGPGAE PPRRRVYVCP  120
VPGCVHHSPA RALGDLTGIK KHFCRKHGEK LWACPRCGKR YAVQADVKAH AKTCGTREYR  180
CDCGTLFTRK DSFVTHRAFC GALVEETGRA LPVPAPPSPR PPDLEAEDNV DKDKEKREEN  240
ENSAVAEKEQ LPRAKALAEK PQHIRSPPPL AQEPQRTAAT SLTASIDAGA TATSLKASTA  300
SGTTATLPTA SISKGGASCG IEPKMVAEPA LIAKQEEEAD EDEGTCLQEA DQYKDTELES  360
TNLLYKNTPM LPCFLPSPSE AIGTDASSTT CGAGGSVSNS IAPSTTTNTF AGLFASATKS  420
TTSQSRSLRD LIGVDPTFLC LAIGSPSPLF PQTNASSPCT FAPPQAPHMS ATALLQKATE  480
VGASQSSSSF LKEFDLGSSF SSSLLSKPPQ GRFNDNKTQQ WHHRSKQQVE MEHYWSNQRM  540
EMELPRSSQQ MEMELPRSNQ QMEMEHRWSN QQMVMEHNWS NQQMEIGPRS MLSSSLGLDL  600
ACQSGNSGLP ELMMGPSSLF GPKPATLDFL GLGIGGTIGG STANGGLPAL MVRGELDMRS  660
AQAPAPWEDG KRKTNGRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-29148209364Zinc finger protein JACKDAW
5b3h_F9e-29148209364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01465.1.g00100.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983991e-171FP098399.1 Phyllostachys edulis cDNA clone: bphyem204a15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647948.10.0protein indeterminate-domain 1
TrEMBLA0A1E5VQB00.0A0A1E5VQB0_9POAL; Zinc finger protein MAGPIE
STRINGLPERR07G17330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.24e-78C2H2 family protein