PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01408.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 508aa    MW: 54774.2 Da    PI: 6.6659
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01408.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.64.4e-20121241186
                      trihelix   1 rWtkqevlaLiearremeerlr...rgk................................lkkplWeevskkmrergfers 46 
                                   +Wt+ +v++Li ++ +++++ +   + +                                +kk++W++vs++m++ gf +s
  Zpz_sc01408.1.g00090.1.am.mk 121 KWTDAMVRLLISVVYSVGDDGEglaA-SagggaggkasaaphgksgssashghghaaaqqQKKGKWKSVSRAMMDNGFLVS 200
                                   69999999999998855555542211.134455555556666666666666667777777********************* PP

                      trihelix  47 pkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                                   p+qC++k+++lnkryk++ +  +++ +++++++++++d ++
  Zpz_sc01408.1.g00090.1.am.mk 201 PQQCEDKFNDLNKRYKRVVDLLGRGrACRVVENHALLDTID 241
                                   **********************99967*******9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-16119267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MERGDGGMAS RGGGVVGSAA MLGLDMHLAP QQMHQVAFQQ QPDQHHHVGG GGGGFQLQQP  60
APARHQQQPP SFSPYSTTSS RVVTATASHD EEMAGNGCGG KGGAVQQQQG GTAGCPWTRM  120
KWTDAMVRLL ISVVYSVGDD GEGLAASAGG GAGGKASAAP HGKSGSSASH GHGHAAAQQQ  180
KKGKWKSVSR AMMDNGFLVS PQQCEDKFND LNKRYKRVVD LLGRGRACRV VENHALLDTI  240
DELTPKAKDE ARKLLSSKHL FFREMCAYHN SGASHLLPHA AGAGVDAAAC LHHPSPAPMV  300
AAASSAARLG HGAPSPPGTK DSSVDADDDS EDGVSNNEDD DEDDYDEDED GHMYPNQRLQ  360
HQHNNHRGKR GRGADDSAAG EDFEDDEAGG KRARTAPGEQ SAAVQQLQSE LASATAADQQ  420
AAKGWVRRRV VEVEEQQVTL DWRAHQLERQ RLKWERFRAN KERDMERARL RNDRLRLDGQ  480
RMLLMLRHRD LELEMAEANS SSVDHHPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01408.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655870.11e-175uncharacterized protein LOC103635104
TrEMBLA0A3L6DT841e-173A0A3L6DT84_MAIZE; Uncharacterized protein
STRINGGRMZM2G305362_P011e-174(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-48sequence-specific DNA binding transcription factors