PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01382.1.g00120.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 274aa MW: 30201.9 Da PI: 8.6279 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22 | 4.2e-07 | 28 | 49 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Zpz_sc01382.1.g00120.1.sm.mk 28 FCAICGKGFKRDANLRMHMRGH 49 6*******************98 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 146 | 164 | 6 | 23 |
TTEEESSHHHHHHHHHH.T CS zf-C2H2 6 CgksFsrksnLkrHirt.H 23 Cg+sFsrk+ L H + H Zpz_sc01382.1.g00120.1.sm.mk 146 CGTSFSRKDKLFAHVALfH 164 **************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.08E-5 | 26 | 50 | No hit | No description |
SMART | SM00355 | 0.012 | 27 | 49 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.448 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 28 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 71 | 76 | 109 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 54 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 150 | 142 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MDGENLAPGS YELLQLEKDE ILAPHTHFCA ICGKGFKRDA NLRMHMRGHG DQYKSPAALA 60 KPPRDASAEH ALVKRYSCPF VGCKRNKLHK NFQPLKTILC VKNHYKRSHC EKSHTCSRCH 120 AKKFSVLADL KTHQKHCGRD KWLCSCGTSF SRKDKLFAHV ALFHGHTPAL PSEDPKASSD 180 QTELLGSQQE AAKLAGSTGS SFKWGGNSFS DDSALDIKGP DGSSNDDFLS TANFGSFNFS 240 FGQLDEFIGN PSENSFAALS HSDHFQSAQK KRGD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01382.1.g00120.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977257.1 | 1e-161 | zinc finger protein STAR3 | ||||
Swissprot | Q943I6 | 1e-110 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | K3Y709 | 1e-159 | K3Y709_SETIT; Uncharacterized protein | ||||
STRING | Si010000m | 1e-160 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 1e-111 | C2H2 family protein |
Publications ? help Back to Top | |||
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