PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01287.1.g00180.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 490aa    MW: 50417.3 Da    PI: 6.3571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01287.1.g00180.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.5e-072222861255
                                   HHHHHHHHHHHHHCTSCCC........................TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkas.....................kapskKlsKaeiLekAveYIksLq 55 
                                   RR+ri +++  L+el+P+a                      + p +  +Ka++L + ++Y+k Lq
  Zpz_sc01287.1.g00180.1.am.mk 222 RRERIAERMKSLQELVPNANkvgnplpchalsssifrivvaALPVTGTDKASMLDEIIDYVKFLQ 286
                                   9*****************888*******************9999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.655210285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-6216291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-5222290No hitNo description
SuperFamilySSF474595.23E-9222306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-4222286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-10223294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MRTADFFAPA SQPASPPLVH SSFLSVMGDR EFGTGSSCAF LSPLFFDYVG RSVADRRAEL  60
SRRIPPRHQP VSSPAQQPQS SIAMQPSGRE LAGGDGAGGA QADDFFDQML STLPSGWADL  120
GGTGGKSPWE LSAGAEEGHS AQAPFGDESA LLASRLQQHQ IGGDKSSSPV MLQLSDLHRN  180
NGLAGGAGED GGFSPLALFT DRSAPAREEM EGGFKSPNAS LRRERIAERM KSLQELVPNA  240
NKVGNPLPCH ALSSSIFRIV VAALPVTGTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA  300
AGMAPLVASM SSEGNSNGSS ISNKGNSPAT NGGTGTGENG GGLRVTEHRV AKMMEEDMGT  360
AMQYLQGKGL ISNKGNSPAT NGGTGTGENG GGLRVTEHRV AKMMEEDMGT AMQYLQGKGL  420
CLMPISLASA ISSATSSASL LSRPPARHQP PHDGSGAAAA AMSSPASAPN GAGGGDDARP  480
VTDGAAKPQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01287.1.g00180.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126145e-46CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688756.11e-75PREDICTED: transcription factor bHLH66-like
TrEMBLA0A1E5W8J73e-86A0A1E5W8J7_9POAL; Transcription factor bHLH69
TrEMBLA0A453QYZ63e-86A0A453QYZ6_AEGTS; Uncharacterized protein
STRINGOBART02G35840.11e-85(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.18e-35LJRHL1-like 2