PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01255.1.g00110.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 253aa    MW: 27056.2 Da    PI: 4.6725
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01255.1.g00110.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB46.68.1e-1535128692
                           NF-YB   6 rflPianvsrimkkvlP.......anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfe 77 
                                     ++lP a v r++k  l        a+  + +da     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f 
  Zpz_sc01255.1.g00110.1.sm.mkhc  35 EELPKAIVRRLVKDKLAhiaggegAEVIVNRDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFS 113
                                     5799999999999988622222112345789************************************************ PP

                           NF-YB  78 dyveplkvylkkyre 92 
                                     ++veplk+ l+  r 
  Zpz_sc01255.1.g00110.1.sm.mkhc 114 EFVEPLKTSLQDKRS 128
                                     *********998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-3032155IPR009072Histone-fold
PfamPF008082.0E-936107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.0E-2537150IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MADEATNESE PQPQAAGTQD KPAPAAAPMT EAEVEELPKA IVRRLVKDKL AHIAGGEGAE  60
VIVNRDAMAA FAESARIFIH YLSATANDMC KESKRQTINA DDVLKALDEM EFSEFVEPLK  120
TSLQDKRSEA SKKQKEKRRK LNEEALPEKG NDPVDDVENA SQKPPLLNHL NHPPSPDHPP  180
PPVAGPLGFL EFSADPIRRC ILLSEWYLFL AVAAAGEEAI GAGTTAASGG TENPHGSKAC  240
RDAGETTGGG KDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01255.1.g00110.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605598e-99BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBankEU9626978e-99EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankEU9640468e-99EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankKJ7283018e-99KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801207.11e-75DNA polymerase epsilon subunit 3
TrEMBLA0A0A9GDS49e-76A0A0A9GDS4_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.17e-35nuclear factor Y, subunit B11