PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01241.1.g00020.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 296aa    MW: 31955.7 Da    PI: 9.7433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01241.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19143193356
                           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   y+GVr+++ +g+++AeIrd  +   k +r++lg+f taeeAa a++aa+++++g+
  Zpz_sc01241.1.g00020.1.sm.mk 143 YRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATAEEAALAYDAAALRMRGP 193
                                   9*******.**********332...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.731116145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-8116142IPR001471AP2/ERF domain
PRINTSPR003671.2E-10117128IPR001471AP2/ERF domain
PfamPF008472.7E-15142192IPR001471AP2/ERF domain
SMARTSM003802.2E-36142206IPR001471AP2/ERF domain
PROSITE profilePS5103223.696142200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-31143200IPR001471AP2/ERF domain
CDDcd000181.25E-15143200No hitNo description
SuperFamilySSF541717.85E-23143202IPR016177DNA-binding domain
PRINTSPR003671.2E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAIGATSGSH RQPDEGTNIL ENVWASIMTG CTATPASSST AVSSSVAGEQ KPESILQRLP  60
SLGRWISMGA EEWDELLSGT TPAPTSDHAS GEELLAASPP ANQDRGSSRA SAACKSYRGV  120
RRRPWGKFAA EIRDTRRKGA RSYRGVRRRP WGKFAAEIRD TRRKGARVWL GTFATAEEAA  180
LAYDAAALRM RGPRAHLNFP LDVVQRELAA AAGDGRAEAT RVLRRKRRRT SDVAAWDAAA  240
AATTCSSDDQ TMVSFAWGSE QGTGMMKERS SSDAGGVIQF EDIGGEYWDY LFAPLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-26141203466ATERF1
3gcc_A3e-26141203466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228RKRRR
2224229RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01241.1.g00020.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU6854121e-88KU685412.1 Saccharum spontaneum clone SES23E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806647.11e-109ethylene-responsive transcription factor 15-like
TrEMBLA0A2S3H9P91e-108A0A2S3H9P9_9POAL; Uncharacterized protein
STRINGPavir.J34156.1.p1e-106(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-19ethylene responsive element binding factor 2