PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01231.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 327aa    MW: 34329.2 Da    PI: 6.084
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01231.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.21.1e-274109199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvy 74 
                                   +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a+   ++   ++++sl+yeA+ r+ +Pvy
  Zpz_sc01231.1.g00050.1.sm.mk   4 SCNGCRVLRKGCSDGCTIRPCLqwikaPEAQANATVFLAKFYGRAGLLNLLAAAaaGPDGPAAVFRSLLYEACGRIVNPVY 84 
                                   6**************************************************99854567789******************* PP

                        DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                   G+vg+++++q++ +q+++e++l +e
  Zpz_sc01231.1.g00050.1.sm.mk  85 GSVGLLWSGQWHACQAAVEAVLKGE 109
                                   ******************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.2653111IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-224105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDGCT IRPCLQWIKA PEAQANATVF LAKFYGRAGL LNLLAAAAAG  60
PDGPAAVFRS LLYEACGRIV NPVYGSVGLL WSGQWHACQA AVEAVLKGEP VVRVAANSAS  120
SAEHPETEVT PPLSARAACD IRHVGAKDRD ASAAAAAAAA VADLLRVSRA GRTKFKRASS  180
SSTTSKTKPA VVGASKPDNS RASPRPSAPT QEVRDPVVVL GSGDELDDAR ALSHREESAG  240
SHQHLDDDCD VAAAQDGSSE DTEAEAGSHV SQAEEHHSHV HASSQDEDDE EVDLELTLGL  300
EPVAVRHEAR SSTWNLRRLS AVSMLMG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01231.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-104EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-104KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310953.13e-98LOB domain-containing protein 42-like
TrEMBLI1IL926e-97I1IL92_BRADI; Uncharacterized protein
STRINGBRADI4G16740.11e-97(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-52LOB domain-containing protein 40