PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01221.1.g00210.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 455aa MW: 50189.2 Da PI: 9.625

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01221.1.g00210.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.8e-06	317	329	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 C++G+ C+FaHg Zpz_sc01221.1.g00210.1.am.mk 317 ACPRGNACPFAHG 329 7***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MGRRCSVSAG CGRRLPPHVD ASPSVHEQLA AHPRRHGSDT TAQTQQVIRP HQECASDCER 60 AGSRTPQRPS IHQRLKCPYG KLTNSRVTWQ AGKGGLATRW LTLLVCQMYY SIRARKLTPS 120 LKKPRVTRHR GVLVSVRVPC RGEKASVRAL RDVAGNMQHR PPRLSTYPPR VSHIPPARLV 180 PNQPTQPRRR EGELSNHQPV CLHASPRTRL ASPTYPPPAS CQTKPRRVGS ESGMVSREQH 240 YSHDFEHLVL DPAALGASSW ADPAAAVEIP QQLLAALGEY LSAGRNGDVG DAEAEADDEF 300 MMYEFKARSX XXXPGVACPR GNACPFAHGT FELWLHPSRY RTRPCRAGVA CRRRVCFFAH 360 TAAELRAAPK EESALLLSPK STLASLWESP PVSPVQGRRW IDAVDEPDAD SEVEELMLAM 420 RGLSFRKAAA SPAPVLPLVT EEDAPDFGWV SELVM

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MGRRCSVSAG CGRRLPPHVD ASPSVHEQLA AHPRRHGSDT TAQTQQVIRP HQECASDCER  60
AGSRTPQRPS IHQRLKCPYG KLTNSRVTWQ AGKGGLATRW LTLLVCQMYY SIRARKLTPS  120
LKKPRVTRHR GVLVSVRVPC RGEKASVRAL RDVAGNMQHR PPRLSTYPPR VSHIPPARLV  180
PNQPTQPRRR EGELSNHQPV CLHASPRTRL ASPTYPPPAS CQTKPRRVGS ESGMVSREQH  240
YSHDFEHLVL DPAALGASSW ADPAAAVEIP QQLLAALGEY LSAGRNGDVG DAEAEADDEF  300
MMYEFKARSX XXXPGVACPR GNACPFAHGT FELWLHPSRY RTRPCRAGVA CRRRVCFFAH  360
TAAELRAAPK EESALLLSPK STLASLWESP PVSPVQGRRW IDAVDEPDAD SEVEELMLAM  420
RGLSFRKAAA SPAPVLPLVT EEDAPDFGWV SELVM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01221.1.g00210.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Z5R4P2	1e-100	A0A1Z5R4P2_SORBI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11209	19	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	3e-11	C3H family protein