PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01147.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 371aa    MW: 40010.6 Da    PI: 10.4265
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01147.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.82.9e-57186281297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy+ep
  Zpz_sc01147.1.g00230.1.am.mk 186 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIEP 266
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk+yl+k+relegek
  Zpz_sc01147.1.g00230.1.am.mk 267 LKLYLHKFRELEGEK 281
                                   ************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.0E-54183292IPR009072Histone-fold
SuperFamilySSF471138.23E-40188285IPR009072Histone-fold
PfamPF008081.8E-27191255IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-20219237No hitNo description
PROSITE patternPS006850222238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-20238256No hitNo description
PRINTSPR006154.5E-20257275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MLDIFFFLSV ACLLIFKNST LRHIVLLTTR SWPAIGVAII SSTFSPGPPW TTPADRASPG  60
PLKRPIRLQR GRNGRHQRAP AGPRLIGKQT ARHSPRRLLD AFLSPRFIRR RDAASLSTPL  120
SNPSPLSSRC SRLPSRFLLD LDVHLAPARK ERGEQGEPAL FLGPAAMPDS DNESGGPSNA  180
EFSSPREQDR FLPIANVSRI MKKALPANAK ISKDAKETVQ ECVSEFISFI TGEASDKCQR  240
EKRKTINGDD LLWAMTTLGF EDYIEPLKLY LHKFRELEGE KVATGASGSG QQQKDAPSSA  300
HNNAAVYGVY GGAGAGGSGS GMVMMMGQPM YGSPPAGYPQ PPHHQMVMGG AKGGYGHGGG  360
SPSGLGRQDR V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-47186276797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01147.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563831e-173EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6QSG31e-94A0A3L6QSG3_PANMI; Nuclear transcription factor Y subunit B-3-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-71nuclear factor Y, subunit B3