PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01097.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 493aa    MW: 51579.9 Da    PI: 9.1985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01097.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013116138123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C+dCg+s+     L  H ++H
  Zpz_sc01097.1.g00020.1.am.mk 116 YTCKDCGRSYAKFRALGGHVSLH 138
                                   9*********9888887777766 PP
2zf-C2H215.93.7e-05173195123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C +Cgk+Fs    L  H+r H
  Zpz_sc01097.1.g00020.1.am.mk 173 HVCRKCGKVFSKGTALGGHMRAH 195
                                   79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.2116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702116143IPR007087Zinc finger, C2H2
PfamPF139120.0025116139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-7116138No hitNo description
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-7168195No hitNo description
PfamPF139126.1E-8172195IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-5172197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.048173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.612173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
PRINTSPR012173.1E-12292304No hitNo description
PRINTSPR012173.1E-12346358No hitNo description
PRINTSPR012173.1E-12359380No hitNo description
PRINTSPR012173.1E-12382398No hitNo description
PRINTSPR012173.1E-12406423No hitNo description
PRINTSPR012173.1E-12431456No hitNo description
PRINTSPR012173.1E-12469481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MGSSSPPLRR LRPDDDDADK GRFVSDDGVR DLRPQSPTRT WESDRTISDD DDDVSPASVL  60
RTEPNERVVG VDGGWATTGK RSRSTEGKQA ATAAPAAKQL PRPVPPPRDD QAPLKYTCKD  120
CGRSYAKFRA LGGHVSLHRI REREAAAAAA AGTGARDGGA LAHRGRKSEG RTHVCRKCGK  180
VFSKGTALGG HMRAHAGDAA VAPVVPEGNK KRCLEPAVDD FVASSAPSLS SAAPIVPEGN  240
KKRCHEPAVD DVAAPPTARV SSAAPIKTEE SSSPAPVRSG RVLLFGVDII LLPPAYLRAP  300
IPNLPASSAG PGSHYRTATA QLTKSSLPAT TVLPAPDDEL PAGADPIQPA SSSSHTPPPT  360
ESSPCALLLP PTLAPSSPPP TTQPQRAPPT TQPALAPPHP ARRCHHPESP AAQPRPQRAP  420
TSHAAPARLH PAWHPIEPSP SDLLVVCSTL PSSSHPSTPL SSCRKRQQPS LHTSFTPPQP  480
SIPVALEAAD LVH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01097.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18437610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-09C2H2 family protein