PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01093.1.g00070.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 846aa MW: 92489 Da PI: 11.3254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01093.1.g00070.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2.1e-05	687	708	5	26
HHHHHHHHHHHHHHHHHHHHCT CS HLH 5 hnerErrRRdriNsafeeLrel 26 h + ErrRR+r+N++fe+Lr+l Zpz_sc01093.1.g00070.1.am.mk 687 HMISERRRRERLNESFETLRRL 708 8889****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.41E-6	676	708	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-5	685	708	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
MGVVRSGWRC PHFIRRKGGS TRREESPWRH KRKRGTRASR GAGGRRDGMA GRHDDAFRYR 60 MPPKGQRRLT EMRSGEVLVL RFQRTCSSFP EPLPTGSEKR SLSPGGCMAF TRGHVESHFD 120 RPPRRNPIRS GASPPPPHAR ACLYLTGFAL STRARRERAS SSISRRSRLL QVRHHQGSPA 180 DRTPGTSASS AARMRERPAP ASAPVATTTG PARRSQLHEL LHSSERRASG DLPFPRPLKP 240 QWHVVHSGPD SFALPHSTTA HSNCSFHEHD RRRSQNPTAM DMDAVQWLVS GQLLILRPFD 300 LDKRERAWPR WKQRGHGHAA SNYHEKQHSR AAPLMDAIFA LAPGPRARVL ERTAARIPGC 360 LYLFLWAPVI AGPLVRSGHL FCLDTWIGNG GVRVRAVFEA YRGSLCAVVS GCVPGWAFKD 420 GRAYMELSEP DLTASASLQV QQQCSTLIKF DVVMQMAVFM GCDGGEMEIG LSSNDSPGAV 480 ADHVQQSLLE ELMQMTPPRP PSSSSSSLPS LSIGSPEYSS LIRSMTTTAT EPSSSRERHP 540 LPLHPAAQLP GFLPPVHGQA PFPSSEAEDA AMAQAILAVI ASSAPPAPAT TTPPPLSPPW 600 LVRHRAQRSS PRRWTGAFKA YNAALSPRSR PRPGAPGQRV VKTAIALMVS VHMAMREREI 660 AAARQQEGVA AAGQPPPPQP TSSQLHHMIS ERRRRERLNE SFETLRRLEA QLGLVVPSRT 720 RQTASDDPSD TTTVQVDVTT GASTSTSTPT AGQPRTVAIR VTVRAECDLS ELVIVLLARI 780 KETGRFVVVT VDAEQRSSDH AQVSITLRTT VGDDGDLDET ALKEAVAKVV EEAVARPPSP 840 RRHGSP

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

MGVVRSGWRC PHFIRRKGGS TRREESPWRH KRKRGTRASR GAGGRRDGMA GRHDDAFRYR  60
MPPKGQRRLT EMRSGEVLVL RFQRTCSSFP EPLPTGSEKR SLSPGGCMAF TRGHVESHFD  120
RPPRRNPIRS GASPPPPHAR ACLYLTGFAL STRARRERAS SSISRRSRLL QVRHHQGSPA  180
DRTPGTSASS AARMRERPAP ASAPVATTTG PARRSQLHEL LHSSERRASG DLPFPRPLKP  240
QWHVVHSGPD SFALPHSTTA HSNCSFHEHD RRRSQNPTAM DMDAVQWLVS GQLLILRPFD  300
LDKRERAWPR WKQRGHGHAA SNYHEKQHSR AAPLMDAIFA LAPGPRARVL ERTAARIPGC  360
LYLFLWAPVI AGPLVRSGHL FCLDTWIGNG GVRVRAVFEA YRGSLCAVVS GCVPGWAFKD  420
GRAYMELSEP DLTASASLQV QQQCSTLIKF DVVMQMAVFM GCDGGEMEIG LSSNDSPGAV  480
ADHVQQSLLE ELMQMTPPRP PSSSSSSLPS LSIGSPEYSS LIRSMTTTAT EPSSSRERHP  540
LPLHPAAQLP GFLPPVHGQA PFPSSEAEDA AMAQAILAVI ASSAPPAPAT TTPPPLSPPW  600
LVRHRAQRSS PRRWTGAFKA YNAALSPRSR PRPGAPGQRV VKTAIALMVS VHMAMREREI  660
AAARQQEGVA AAGQPPPPQP TSSQLHHMIS ERRRRERLNE SFETLRRLEA QLGLVVPSRT  720
RQTASDDPSD TTTVQVDVTT GASTSTSTPT AGQPRTVAIR VTVRAECDLS ELVIVLLARI  780
KETGRFVVVT VDAEQRSSDH AQVSITLRTT VGDDGDLDET ALKEAVAKVV EEAVARPPSP  840
RRHGSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	33	RRKGGSTRREESPWRHKRKR
2	690	695	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01093.1.g00070.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022681563.1	0.0	putative transcription factor bHLH041
TrEMBL	A0A3L6PIY5	1e-178	A0A3L6PIY5_PANMI; Uncharacterized protein
STRING	Si007981m	1e-173	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3977	33	67