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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zpz_sc01056.1.g00030.1.am.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
ARF |
| Protein Properties |
Length: 547aa MW: 62574.6 Da PI: 7.1461 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc01056.1.g00030.1.am.mkhc | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 50.5 | 3.9e-16 | 181 | 244 | 33 | 98 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+++l+ +d++ +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v +++++e +v+v+r
Zpz_sc01056.1.g00030.1.am.mkhc 181 TQELITKDLHESEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYL--RSETGEQRVGVRR 244
458999******************************************999..4477778999997 PP
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| 2 | Auxin_resp | 94.3 | 2e-31 | 270 | 351 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79
a+ha++t+s+F v+Y+Pr+s+s+++v+++k++++ k+ ++ GmRfkm+fe++d++ +++sGt+v+ dl p +W++S+W
Zpz_sc01056.1.g00030.1.am.mkhc 270 ASHAIKTNSIFLVYYRPRSSQSQYIVSLNKYLQSSKIGFTDGMRFKMSFEGDDVPVKKFSGTIVDKGDLAP-QWKGSEW 347
789********************************************************************.******* PP
Auxin_resp 80 rsLk 83
+ Lk
Zpz_sc01056.1.g00030.1.am.mkhc 348 KTLK 351
*996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 547 aa
Download sequence Send
to blast |
PTHHRRVGDH TNTLHLLLIL LRHFASQEPG ASCRPKKPRP LPRRALAMAQ ARDLELFAEL 60
WRACAGPLVE LPQRDERVFY FLQGHLEQLQ EPTDPALLAE QIKMFQVPNK ILCKVVNVEL 120
KVNSWITLAL FNLLLQSRFL NYYTSTSILV SAAQAETETD EMFAQITLQP DPDDMSMPTP 180
TQELITKDLH ESEWRFKHIY RGQPRRHLLT TGWSTFVTSK KLIAGDAFVY LRSETGEQRV 240
GVRRLVQKKS TMPASVISSQ SMRLGVLASA SHAIKTNSIF LVYYRPRSSQ SQYIVSLNKY 300
LQSSKIGFTD GMRFKMSFEG DDVPVKKFSG TIVDKGDLAP QWKGSEWKTL KVQWDDAANF 360
SGPERVSCWE IEPFDASAPS INIPMQPSTK TKRSRETAES LDVQELEPAQ EFWLSGSGRA 420
QQQEKTALKQ ELLLGLAFLL TKLRNPLPSC LVQMHGNAVG RSVDLANFDR YEQLIGELEH 480
MFEIKELNSK EKWKVAFTDD DGATIEIEDN RPWLEFRQVV KKIVIYPIED WRKVEPAPEE 540
EDLKTEF
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ldv_A | 1e-104 | 56 | 381 | 19 | 362 | Auxin response factor 1 |
| 4ldw_A | 1e-104 | 56 | 381 | 19 | 362 | Auxin response factor 1 |
| 4ldw_B | 1e-104 | 56 | 381 | 19 | 362 | Auxin response factor 1 |
| 4ldx_A | 1e-104 | 56 | 381 | 19 | 362 | Auxin response factor 1 |
| 4ldx_B | 1e-104 | 56 | 381 | 19 | 362 | Auxin response factor 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ858759 | 0.0 | HQ858759.1 Zea mays clone UT1501 ARF transcription factor mRNA, partial cds. |
