PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01020.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 364aa    MW: 38917.8 Da    PI: 8.801
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01020.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.8e-2955158199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 
                                   +C++C+vlr++C+++C ++p++     p++q++++ +++k++G + +l+l++a+pe+ r+ +++sl+yeA+ r+ +P+yG+
  Zpz_sc01020.1.g00110.1.am.mk  55 SCNGCRVLRKGCSDSCSIRPCLqwiktPDAQSNATVFLAKFYGHAGLLNLVNAAPENLRPSVFRSLLYEACGRIVNPIYGS 135
                                   6******************************************************************************** PP

                        DUF260  77 vgvilklqqqleqlkaelallke 99 
                                   vg++++ ++ ++q+++e++l ++
  Zpz_sc01020.1.g00110.1.am.mk 136 VGLLWSCNWSMCQAAVEAVLKGA 158
                                   *****************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.56854160IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-2355153IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRELKKRRVV EKIMERGRRT SPAKALRRGH LPAASGAAAQ IVYKSTRTTQ EMRLSCNGCR  60
VLRKGCSDSC SIRPCLQWIK TPDAQSNATV FLAKFYGHAG LLNLVNAAPE NLRPSVFRSL  120
LYEACGRIVN PIYGSVGLLW SCNWSMCQAA VEAVLKGAPI VQISSADAAA ADTTSSPAHV  180
SSLHKAAYDI RHVASSSSSK KQPLCASPPQ TKAPDADKPV RLNLKKRTSD SSSAAATCSN  240
KKRKQQQQPA SLQHQQDSAV SDDHQHDSAV SDQQKHGHMA VESSNSDDDA QAAGSHVSQA  300
EHNEKEVEEE QQQNQLGLDL TLGLAPVPAP CVPHLPAPTA GDAGCSLAGT GTGWSASEPA  360
FRFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224243KKRTSDSSSAAATCSNKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01020.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310953.15e-81LOB domain-containing protein 42-like
TrEMBLA0A0A9PIQ88e-88A0A0A9PIQ8_ARUDO; Uncharacterized protein
STRINGMLOC_58304.19e-84(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-66LOB domain-containing protein 41