PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00982.1.g00240.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 757aa MW: 80049.8 Da PI: 8.2371 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.1 | 3.8e-12 | 341 | 397 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g Zpz_sc00982.1.g00240.1.am.mk 341 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLAALKYWG 397 78*******************433.44555535555.77******************98 PP | |||||||
2 | AP2 | 23 | 2e-07 | 440 | 472 | 1 | 36 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 s y+GV+++++ grW A+I +s +k +lg+f Zpz_sc00982.1.g00240.1.am.mk 440 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTF 472 57****************999754...4*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-13 | 341 | 406 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.80E-16 | 341 | 404 | No hit | No description |
Pfam | PF00847 | 1.2E-9 | 341 | 397 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-21 | 342 | 411 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.937 | 342 | 405 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-11 | 342 | 405 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-12 | 440 | 568 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-5 | 440 | 473 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.984 | 441 | 566 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-14 | 441 | 572 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-4 | 441 | 474 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-6 | 540 | 566 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MRKTDCETTL LVDSAHAYLP PEVGSARHHL VLLRLACRRH YKMTSNSSQN VSSCSTGGGD 60 AAAGGGSWLG FSLSPHHVAS MDAAADGARG VPQHHLGLFY PPVTSSPAPF CYALGGSGQD 120 SVVGQAAGAS GGGFYPALSS MPLRSDGSLC ITDAYRRSEE GQHHGMVASS ASPKLEDFLG 180 AGPAMALSLD NSSLYYGGGH GGHPEHGQDH GGYPQPVHCA MIPGAAATHD VYGHALMVDE 240 QSAAAIAASW FAARGVGGYD VNSTGVDAGL VPCHPLALSM SSGTGSQASC VTMQMGAHAD 300 PVAEYIAMEG SKKRGTDRGA GAGQKQTVHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW 360 DNSCRKEGQT RKGRQGGYDM EEKAARAYDL AALKYWGPST HINFSLEDYR EELEEMKNMT 420 RQEYVAHLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VSGNKDLYLG TFTLAPPRRM 480 FAPPIPAHFS PRFCACVAGC RPQLALAFGH LFVRLARRGP ARLGAPDRAS LSRFACLRIA 540 TQEEAAEAYD VAAIKFRGLN AVTNFDITRY DVEKIMESST LLPSELVRRR KDGDVGTVAA 600 AAAITEGDAT AVANAAAALV HAGNGSNAVE WKIQAAAALP AAPGRTDEHV QQNHGILASE 660 AFSAFSGLDD MVPGVEADNA HMSNASSLAT SVSNSREQSP ERGGGLAVLF AKPVAAASKL 720 TCPPLPLGSW VSPSPVSARP AVSIAHLPMF AAWTDAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00982.1.g00240.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375318 | 1e-138 | AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796942.1 | 0.0 | AP2-like ethylene-responsive transcription factor CRL5 | ||||
Swissprot | Q38914 | 1e-108 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1D6L665 | 0.0 | A0A1D6L665_MAIZE; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | Sb01g006830.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-106 | AP2 family protein |