PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00972.1.g00100.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 285aa    MW: 31041.3 Da    PI: 11.4201
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00972.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP69.18.4e-22239285248
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                                   C v++C+adls++++yhrrhkvCe+hsk+pvv+v g+e+rfCqqCsr
  Zpz_sc00972.1.g00100.1.am.mk 239 CSVDRCRADLSRCRDYHRRHKVCEAHSKTPVVVVGGQEKRFCQQCSR 285
                                   **********************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-22233285IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.666236285IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-20238285IPR004333Transcription factor, SBP-box
PfamPF031103.8E-15239285IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLATFGHLVV HHRMSRNRGD AVFQGELLHG LDRNNHGNAT GASSGGAWSG KLHWEPPSLM  60
LRLPPATQRF AADTKPHHPS VSRHTHPRAY AVRSLLTAPP LSTVPPGRLP PIPAMSSSCC  120
ARECKGSIKI TDHGFPRDIA ARFLARMPFS SWLQWWRRFL AGDMNRAAVT SEVSSWGAAA  180
DRGPIMLSFA GPSSSTSPAA EIQFQDFSVG LVRRAQPPGS SGARRRSRGA SGGGVPEACS  240
VDRCRADLSR CRDYHRRHKV CEAHSKTPVV VVGGQEKRFC QQCSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-17239285652squamosa promoter-binding protein-like 12
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00972.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1336083e-52AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence.
GenBankAC1355693e-52AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence.
GenBankAP0149673e-52AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-18SBP family protein