PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00972.1.g00100.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 285aa MW: 31041.3 Da PI: 11.4201 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 69.1 | 8.4e-22 | 239 | 285 | 2 | 48 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 C v++C+adls++++yhrrhkvCe+hsk+pvv+v g+e+rfCqqCsr Zpz_sc00972.1.g00100.1.am.mk 239 CSVDRCRADLSRCRDYHRRHKVCEAHSKTPVVVVGGQEKRFCQQCSR 285 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-22 | 233 | 285 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.666 | 236 | 285 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.15E-20 | 238 | 285 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.8E-15 | 239 | 285 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MLATFGHLVV HHRMSRNRGD AVFQGELLHG LDRNNHGNAT GASSGGAWSG KLHWEPPSLM 60 LRLPPATQRF AADTKPHHPS VSRHTHPRAY AVRSLLTAPP LSTVPPGRLP PIPAMSSSCC 120 ARECKGSIKI TDHGFPRDIA ARFLARMPFS SWLQWWRRFL AGDMNRAAVT SEVSSWGAAA 180 DRGPIMLSFA GPSSSTSPAA EIQFQDFSVG LVRRAQPPGS SGARRRSRGA SGGGVPEACS 240 VDRCRADLSR CRDYHRRHKV CEAHSKTPVV VVGGQEKRFC QQCSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 2e-17 | 239 | 285 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00972.1.g00100.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133608 | 3e-52 | AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence. | |||
GenBank | AC135569 | 3e-52 | AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence. | |||
GenBank | AP014967 | 3e-52 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-18 | SBP family protein |